Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00359 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAACGTGAAGAAGGGGCCATGGTCACCGGAAGAAGATACAAAGCTGAAAGAGTACATAGAGAAGAACGGAACAGGAGGTAATTGGATCGCTCTTCCTCAGAAAGCAGGTCTAAAAAGGTGTGGGAAAAGTTGTAGATTGAGGTGGCTCAACTATCTGAGGCCCAACATTAAGCACGGCGAATTCTCTGATGATGAAGACAGAATAATATGCACCCTCTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGGAGGACAGACAATGATATTAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCATGGGTTTGCTTCCTCCGTCCTCTAATCACCAGATCAGGAATAAACCTCCTGCAACGTTATTTCATGAATCCTCTCATCTTCATAATGATCATCAAAACCCACCTTTTACTTCATCATACAGAGACTTTAGCCCTTCTTATTACTACCCTAGCCCATCAACTATATCCTTCACAGGCCTAGAGTCCACTTCTGCTGTTATGGCTTCAACCACCAATAACTTCCCTTATTTTCAAAACCAAGAAGCCTCCTTGGTCAGTCCATCAATGCAATACTACTACAACATGTTTGGAAGTGAAGGAAGTTGCAGCACTTCATCAGATGGAAGCTGCAGTCAAATCAGCCATGGAGGCAGAGGAGACGTCAAACAAGATGAGATGGGTTTTCATCTATTCCATCATCAAAACTTCAACAACTTGTCCAATGGTAAAGGTGGGTTTGATGATCATCATCACGAGTTGAGCAACAATAACAAGTTCATGCCCGGAGGTGAAACTAGTATTATTAACCAGTGGACATCGTCAGAGAAGCCAAGTGATCAGTACTTTGGGCAAACCCCATTATTAATGGAGTATGGAATTGAGGAGATAAAACAGATGATCAGTGGTCATAATAATAATATTGAGGAAAACAAGAGAGAGGAAGGGATGATGTACTACTACTACTGA 1017 0.4238 MGRAPCCDKANVKKGPWSPEEDTKLKEYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPPSSNHQIRNKPPATLFHESSHLHNDHQNPPFTSSYRDFSPSYYYPSPSTISFTGLESTSAVMASTTNNFPYFQNQEASLVSPSMQYYYNMFGSEGSCSTSSDGSCSQISHGGRGDVKQDEMGFHLFHHQNFNNLSNGKGGFDDHHHELSNNNKFMPGGETSIINQWTSSEKPSDQYFGQTPLLMEYGIEEIKQMISGHNNNIEENKREEGMMYYYY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00359 338 CDD SANT 70 111 IPR001005 -
Accr13g00359 338 FunFam Transcription factor RAX3 7 68 - -
Accr13g00359 338 Coils Coil 310 330 - -
Accr13g00359 338 PANTHER OS09G0431300 PROTEIN 1 276 - -
Accr13g00359 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Accr13g00359 338 SMART sant 13 64 IPR001005 -
Accr13g00359 338 SMART sant 67 115 IPR001005 -
Accr13g00359 338 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Accr13g00359 338 Gene3D - 7 68 - -
Accr13g00359 338 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Accr13g00359 338 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Accr13g00359 338 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Accr13g00359 338 CDD SANT 16 62 IPR001005 -
Accr13g00359 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr13g00359 338 Gene3D - 70 136 - -
Accr13g00359 338 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00359 Accr-Chr13 3624796 3626259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00359 1 119 MYB Transcription Factor Family AT5G57620 89.076 7.19e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr13g00359 Myb_DNA-binding 8.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00359 K09422 - qsu:112023410 338.961