Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00357 ATGCAGAGATCTGGTTATGGCCGGGATGGAATTTACAGGTCTCTCCGGCCCACTCCCGCCATTCCGAGGGACGATAATCTCTCTCTCGTTTCATTTCTCTTCAGAAATGTCGCCTCTTTTCCCACCAAACCTGCCTTGTTTGACGCTGATTCCTCCCAATCTCTATCCTTTGCTCAGCTCAAGTCCTTGGTAGTGAAAGTCTCCCATGGCTTCCGACATCTGGGCATCAACAAAAACGATGTCGTCCTCTTGTTTGCTCCCAACACCATCCTCTACCCTGTCTGCTTCCTCGGCCTCACCGCCATTGGCGCCATAGCCTCCACCGCCAACCCTATGTACACTGTGGCGGAGATTTCCAAGCAGGTGAAAGATTCCAATCCCAAGCTCTTGATTACCGTTCCTGAACTGTGGGACAAAGTGAAGGGTTTCAATCTCCCCTCGCTGATTTTGGGTTCCCAAATCCCTTCCCCTGTCGCGCCGAATTCGAAGATTACCACCTTCGATGAATTGCTTGAAATTGCAGGGTCACCAACGGAATTTCCGGCGAGTAATGTCAAACAGAGCGATACGGCGGCGCTTTTGTATTCCTCCGGTACCACCGGGGTTAGTAAGGGAGTGATTCTCACGCATAAGAATTTCATAGCCGCCTCTCTTATGATTGGCATGGACGACGAGTTGGCTAACGAGAGACACAATGTCTTTCTTTGCGTTCTCCCGATGTTTCATATTTTCGGGCTTGCAGTCATTACGTACGCGCAGCTTCAGAGGGGCAATGCAGTCGTGTCTATGAAGAAATTTGACTTCGAAATGATGTTAGAGGCCGTTGAAAAGTATAGCGTGACTCGTTTGTGGCTTGTGCCTCCAATTATCTTGGCTTTGGCAAAGCAGAGCGTGGTGAAGAAGTATAATCTTTCGTCATTGAAGCAAATTGGTTCCGGAGCTGCTCCTCTGGGGAAAGAATTGATGGAAGAGTGTGCTAAAAAGTTCCCTCAAGCTTTGGTTTTGCAGGGCTATGGTATGACAGAAACTTGCGGCATTGTATCTGTGGAGAATCCAAGGATGGGTATTCGTCATAGTGGTTCAGCAGGAATGCTCGTTTCAGGAGTTGAGGCTCAAATAATCAGTGTGGATACACTGAAGCCCCTCCCACCTCATCAGTTGGGTGAGATATGGGTACGGGGTCTTAATATGATGCAAGGTTATTACAACAATCCGCAGGCCACCAGGTTAACTATCGATAAAATGGGATGGGTTCATACAGGAGATATTGGTTATTTTGATGAGGAAGGGCAACTTTATGTTGTTGACCGTATCAAAGAGCTCATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGACTGCTTGTTTCTCACCCTGAGATAATGGATGCTGTTGTCATCCCATTTCCTGATGCGGAGGCTGGTGAGGTCCCAGTTGCCTATGTTGTTCGTTCGCCCAATAGTTCACTGACTGAAGAAGACATTCAGAAGTTTATTGCTGATCAGGTTGCACCTTACAAAAGATTGCGTAGGGTGACATTCATCAACGCTGTTCCCAAGACAGCTTCTGGGAAAATTCTAAGAAGAGTGCTTATTGAGAAAGTACGCTCCAAGATATGA 1629 0.4733 MQRSGYGRDGIYRSLRPTPAIPRDDNLSLVSFLFRNVASFPTKPALFDADSSQSLSFAQLKSLVVKVSHGFRHLGINKNDVVLLFAPNTILYPVCFLGLTAIGAIASTANPMYTVAEISKQVKDSNPKLLITVPELWDKVKGFNLPSLILGSQIPSPVAPNSKITTFDELLEIAGSPTEFPASNVKQSDTAALLYSSGTTGVSKGVILTHKNFIAASLMIGMDDELANERHNVFLCVLPMFHIFGLAVITYAQLQRGNAVVSMKKFDFEMMLEAVEKYSVTRLWLVPPIILALAKQSVVKKYNLSSLKQIGSGAAPLGKELMEECAKKFPQALVLQGYGMTETCGIVSVENPRMGIRHSGSAGMLVSGVEAQIISVDTLKPLPPHQLGEIWVRGLNMMQGYYNNPQATRLTIDKMGWVHTGDIGYFDEEGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEIMDAVVIPFPDAEAGEVPVAYVVRSPNSSLTEEDIQKFIADQVAPYKRLRRVTFINAVPKTASGKILRRVLIEKVRSKI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00357 542 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Accr13g00357 542 Gene3D - 10 439 IPR042099 -
Accr13g00357 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Accr13g00357 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 439 - -
Accr13g00357 542 Pfam AMP-binding enzyme 34 444 IPR000873 -
Accr13g00357 542 CDD 4CL 21 534 - -
Accr13g00357 542 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Accr13g00357 542 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Accr13g00357 542 SUPERFAMILY Acetyl-CoA synthetase-like 22 540 - -
Accr13g00357 542 Gene3D - 440 541 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00357 Accr-Chr13 3585198 3589173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00357 1 542 Monolignol Biosynthesis Gene Families AT4G05160 69.301 0.0 809