Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00340 ATGTGTAAAACCAAAATGGCTGTCGATGCTTCCACCCCTCGAAACACTCGTACCCCTAAATCAAGAACTCCTTCAGCTTCCAGACCCGCCGCCGATTCTTCCTTCGATCCCTCCTCTTCTTACACCAGCTCCGCCGCTTACTCCGGCTCCTCCGGTTTCAGACTCACCTCCGATACCTCCATTTCCAGCGGAGCCTCTCTCTCTAGTTTTCGAGATAGCCTCCCTGAAAACCCCCACATCTACGACTTCTCTGAAATTTGCTCCGCCACCAACAATTTCCTCGCCAGGCGTTATTCTTCCTCCTCTTCTACTCCCTCTTGGCGATGTACTCTCAGAGGCAGAGACGTAATTGTTTTCCAGCGCAAGTTCCGTCGCAAACTCCAGGTGAATCAGGTCAGAGAACGCCTCTCTGTGATCGGCCGCAGCCACCACGTCAGCATCATCAAGCTCGTCGGTGCTTGCATGTCCGGCGATCACATCTACCTCGTGTACGACTTCGTCAATGGAGCTAATCTCTCCGATTGTTTGCGAAATAAGAAGAACCTTAACTTCACGGTCCTGTCCAGTTGGATTTCAAGAATGCAGGTTGCTACGGATCTCGCCGAGGGGCTTGATTATATTCACAACAAAACCGGCTTAACCCTAAACTTCGTGCACAATCACATCAAGAGCAGTGCGATAATCGTAACGGAACCTTCGTTCAACGCCAGGATTTCACACTTCGGCGCCGCCCAGATGTGCGGTGAGATCGAGGAAGAGAGCGAAAGTGCGAAACAGATGGAAGCGATTCAAGAGGCATCATCTTCCTCCCCATCTTCTTCCACGAAATCAAAGGACGCAAAACCATCGAGAAGCTCTAACACGCAATTCGAGGGCGTAAGAGGGTACATGGCACCGGAATACCAATCCACCGGCGTGGCGACCCAGAAGTCCGATGTGTACGCTTTTGGGGTAGTGATCTTGGAGTTGCTATCGGGGGACGAACCACTAAAGTTCAAGTACGATAAGAAGACCGGCGAGTTCGTGACCAACTCCGTGATTGATACGGCGAGGGTCGTTCTGGAAGGTAATCCCAACGGCAGTGGTGGCGTGGAAGGGAGGCTGAGGAGATGGATGGACAGGAGGTTGAAGGACTCGTTCCCGGTCGAGGTGGTAGAGGAGGTGACACGTGTAGCGCTCAGTTGCGTACACGTGGATCCAGATAAGAGGCCCAATATGGGACGCGTCGCTGGAAAAATCTCGAGGCTGTATCTGAAATCTAGGATTTGGTCCGACAATATGAGAACGCCCACTGATATTCTTTCAACCTCATTTGCTCCTAGATGA 1326 0.5181 MCKTKMAVDASTPRNTRTPKSRTPSASRPAADSSFDPSSSYTSSAAYSGSSGFRLTSDTSISSGASLSSFRDSLPENPHIYDFSEICSATNNFLARRYSSSSSTPSWRCTLRGRDVIVFQRKFRRKLQVNQVRERLSVIGRSHHVSIIKLVGACMSGDHIYLVYDFVNGANLSDCLRNKKNLNFTVLSSWISRMQVATDLAEGLDYIHNKTGLTLNFVHNHIKSSAIIVTEPSFNARISHFGAAQMCGEIEEESESAKQMEAIQEASSSSPSSSTKSKDAKPSRSSNTQFEGVRGYMAPEYQSTGVATQKSDVYAFGVVILELLSGDEPLKFKYDKKTGEFVTNSVIDTARVVLEGNPNGSGGVEGRLRRWMDRRLKDSFPVEVVEEVTRVALSCVHVDPDKRPNMGRVAGKISRLYLKSRIWSDNMRTPTDILSTSFAPR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00340 441 ProSiteProfiles Protein kinase domain profile. 55 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00340 441 MobiDBLite consensus disorder prediction 260 292 - -
Accr13g00340 441 Gene3D Transferase(Phosphotransferase) domain 1 168 430 - -
Accr13g00340 441 MobiDBLite consensus disorder prediction 9 41 - -
Accr13g00340 441 Pfam Protein kinase domain 125 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00340 441 PANTHER OS09G0572100 PROTEIN 1 441 - -
Accr13g00340 441 SUPERFAMILY Protein kinase-like (PK-like) 108 409 IPR011009 -
Accr13g00340 441 MobiDBLite consensus disorder prediction 254 294 - -
Accr13g00340 441 MobiDBLite consensus disorder prediction 1 41 - -
Accr13g00340 441 Gene3D Phosphorylase Kinase; domain 1 56 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00340 Accr-Chr13 3429328 3430653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00340 76 435 Receptor kinase-like Gene Family AT1G51940 28.846 5.10e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Accr13g00340 Pkinase 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00340 - - qsa:O6P43_028397 558.525