Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00336 ATGAGCATCAGAAGGCCTGAACCGCATGTAGCGCAACAACTTCGGCGTGACAGGTTGAGAATAATCCAGAGCACCTCCCAGCAGTTACAAGATTTCCCAAGCAATCTTGAACAATTACCTTTACGTCCAGGGACTACTTCTGATCTTCTTCAAGTTAGGAGTGTGAGTAATGCCAATATGCTCTACGAACCTGCCTATAATTCATCGGATATGGTCAATTTCTCAACGGCTTCGAATCCGTTAGCCGAATCCAGCAGGCTGATGACGATGCCTCACTTCGCTTCGTCCAGTTTTCAATCTTCTCTCCAAGAGCAATGCGAAGTACGTAATTTAAGCTATTGGAGAAACAGTGGGTCACACCAATTATGTGATTGGATGCCTAATTATGCCTCTAGTTCGGGGACTAACGAAAGCAATCCTAATCCTAATTCCATTTTTGGCGTGGAAATCAATAATGAACTCACGGGTGTACGATCGTCTTCTCTGAACAATCCGAACGTTATCATGCAGGATATAATCAAATCAGCTTCATTCAGTGGGCAAGGGTCAGAAACGACGCAACAAACTGACCATGGAATATGGGTGGGCAACGGAAATCAACTCTTCTTCGTTCCAAACTATGGAATCCAATCAAATCAGTTGCGTTCTGGCAATCCTAATTCTTGCACTAATCGAACGATCCATAGTGATGAATCGTCGGGTCATCGAGTGAGCGACTCCAATAATCAGGGCCTATCTTTATCACTTTCGTCGAATTCACAATGCTCAAAACCTGTGAAGTCTGTTTCGAATCACTCTTCCAATGCTGTAGACCGTACAGATTATCGAAATGTGGGGCCTCTGGGCCCTTTCACCGGGTATGCTACCATATTGAAGAATTCGAATTTCTTAAAGCCAGCGCAAGAGTTGTTAGAAGAAATCTGTGGTCCCAGCAATGAAAAACTTACGAAAGCGCCTGATTTTTCTGGAGGAGTTGGTGCTTCCACTTCTGCTGACGTGGCCAATGCAACAATTGAAAGTGGTGTTAGCACGAAGAATGGTAGTTCTGGTGCTTCTTCGTTCTCCATGCTTCAGTGTTCTAATGTAAATGAGAATAGGGGTGATGGTGGAAACAGGAGTAGCTCTAGCCCTTCTTCTCGGCCAGAGTATCAACAAAGAATGGCCAAGTTCCTGTACATGCAAGAGGAGGTTATCCGAAGATACAGGCAGCATCAGCAACAAATGCAAATGGTTATTCCATCCTTTGAGTCTGTTGCAGGTCTTAGTTCTGCTACTCCTTACATCTCCAAGGCCCTCAAGGCAATATCAAGACACTTCAGATGCCTAGAAAATGCCATCTCCGATCAAGTTAAGCATATAAGAGGAGTTTTGGGAGAGGAATTACCAGCAACTACCTGTGGTGGTGCTTCACCCACCAGCAGCGACAAACATGACATCAGCAACATTGCGCGACAGAAGTTCTTGGACCAAAGCTTTCAAAAGAACAAATTCATTGCGAGTGGTACAGGCTATGTTGAACACCAACAGCTTGCCTGGAGGCCACAGCAGAAAGGCTTGCCAGAACGTGCGGTGTCGGTTCTTAGAGCTTGGTTGTTTGATCATTTTCTTCATCCGTACCCCACGGACGCTGATAAACACATGCTAGCTGCTCGAACAGGTCTAACTCGGAATCAGGTATCAAACTGGTTCATAAACGCACGAGTGCGTGTTTGGAAGCCAATGGTGGAGGAAATACACATGCTTGAGACGAAAGGGTTGACGATTGAGAAAGACACCCAAAACGCTGGTAAAAGCGAGGGTCCTTGTCCCATTGAAGGTGGCCACCAGCCAAGAGGGGATCAACCTCTGAGAAGCAATCAATTGCAGTGTGTAGAAAGCCGTGTGGATGAGGAGATGGTGGCGGTGGCGGAATTAAACTCACAACAATGGAACCAAGAGAAGCGATCCACACTTGGATGTCACGTTACGCCCAGCACGGATGGCACATTAATGGGTTTTGTTCCTTACAGAAGGGCTGAGGTGGAGGTTGGGGGAGCCGGACCTGTGTCCCTAACGCTGGCTCTCAAACATGGTGACGTTGAAGCAATACAGCAACACCACCACCAGCTCAGCCGCCATTTTGGAGGGCATCTCATCAATGACTTTGTTGGCCAATAA 2157 0.465 MSIRRPEPHVAQQLRRDRLRIIQSTSQQLQDFPSNLEQLPLRPGTTSDLLQVRSVSNANMLYEPAYNSSDMVNFSTASNPLAESSRLMTMPHFASSSFQSSLQEQCEVRNLSYWRNSGSHQLCDWMPNYASSSGTNESNPNPNSIFGVEINNELTGVRSSSLNNPNVIMQDIIKSASFSGQGSETTQQTDHGIWVGNGNQLFFVPNYGIQSNQLRSGNPNSCTNRTIHSDESSGHRVSDSNNQGLSLSLSSNSQCSKPVKSVSNHSSNAVDRTDYRNVGPLGPFTGYATILKNSNFLKPAQELLEEICGPSNEKLTKAPDFSGGVGASTSADVANATIESGVSTKNGSSGASSFSMLQCSNVNENRGDGGNRSSSSPSSRPEYQQRMAKFLYMQEEVIRRYRQHQQQMQMVIPSFESVAGLSSATPYISKALKAISRHFRCLENAISDQVKHIRGVLGEELPATTCGGASPTSSDKHDISNIARQKFLDQSFQKNKFIASGTGYVEHQQLAWRPQQKGLPERAVSVLRAWLFDHFLHPYPTDADKHMLAARTGLTRNQVSNWFINARVRVWKPMVEEIHMLETKGLTIEKDTQNAGKSEGPCPIEGGHQPRGDQPLRSNQLQCVESRVDEEMVAVAELNSQQWNQEKRSTLGCHVTPSTDGTLMGFVPYRRAEVEVGGAGPVSLTLALKHGDVEAIQQHHHQLSRHFGGHLINDFVGQ 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00336 718 MobiDBLite consensus disorder prediction 214 277 - -
Accr13g00336 718 SUPERFAMILY Homeodomain-like 519 579 IPR009057 -
Accr13g00336 718 MobiDBLite consensus disorder prediction 236 273 - -
Accr13g00336 718 MobiDBLite consensus disorder prediction 214 228 - -
Accr13g00336 718 SMART prehox3 285 448 IPR006563 -
Accr13g00336 718 SMART HOX_1 513 577 IPR001356 GO:0003677
Accr13g00336 718 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 225 591 - -
Accr13g00336 718 FunFam BEL1-like homeodomain protein 9 516 578 - -
Accr13g00336 718 CDD homeodomain 519 574 IPR001356 GO:0003677
Accr13g00336 718 Gene3D - 516 578 - -
Accr13g00336 718 MobiDBLite consensus disorder prediction 592 617 - -
Accr13g00336 718 MobiDBLite consensus disorder prediction 360 383 - -
Accr13g00336 718 Pfam Homeobox KN domain 530 569 IPR008422 GO:0003677|GO:0006355
Accr13g00336 718 Pfam Associated with HOX 290 447 IPR006563 -
Accr13g00336 718 ProSiteProfiles 'Homeobox' domain profile. 532 573 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00336 Accr-Chr13 3356140 3359585 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00336 376 690 Homeobox Transcription Factor Family AT4G34610 40.881 5.35e-62 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr13g00336 POX 2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00336 - - pcin:129312762 923.694