Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00331 ATGGTTTATCTCTGGTTCATTGCCTTACTATGCATTATTAGTTCAAGCTCTGCTCATCAATTCTATGACTCTACAAATTGTTCCACAGATCCTGACACATACCCAGGTTCGAGGTACACTTGTAAAACTCCCCAAGATCTATGCCAAACATACTTAGTGTTCAGATCGAACCAACATTTTCAGAAGATTTCAGAGATCTCAAAGCTCTTCCACAATGACCCTCACACATTGCTTCAAGAAAATAACCACCTCAACCTCAACTCTTCTTCTCAGTTCATTGAAGCAGGCAAAGAGGTTCTTATTCCTGTCAATTGTTCTTGCTCTGGCGGTTTCTATCAAGTCAGTTTTAGATATGTAGTCCCAGAAAATACAACATTTTCAGAGATTGCCTGTGGGGTTTATGAAGGGCTTCTCAAATCTTCCACGCTCGAACAGGACAACCTTAACACGACCAGAGCTGGTGATGAGCTTAATGTTCCTCTTAGATGCGCATGTCCTGATAATTCCAGTTCTATTGGCAAGAAGTTGAAGTACCTTATGACATACCCTATAATACTAGGAGATACAGATAGTGCCATAAGTGCAAAATTTGGCATCTCAAAAGAAAATTTCCGTGAAGTCAATGACTTGCAACAATTTTCAACTCTCTTCCCACAAACAACTGCTTTGATCCCATTGAGAGATGATAAAATCAAGATTATTGATATTCTAGATTCGTCTCCAGCTCCAACCTCTGGTTTTCTCCCAACACTTCCAGTGGCGAAAACACGGAAAAATCGAACCAGTTTGTACATAGCAAGTTCTGTCATAGTATCTTTGATACTAATCATGGCAATTCTTGTGGGTGTATTGTATTTGAAGGCCTTAAGGAAATGGAAAAGCGAAGGTGTTCGACCCTTAACTCCTTCAACCTCCATCGCCATGTCACCGATGAGAGGCTCTTCAACGACTTCATGTCTTTCTCCAGATCTTCTTGCCGGAATAAAGTACTGTTTGGCCAATTACAGCATAGAAGAGCTCAAGATGGCCACGAAAAATTTCAGTGAAGAAACCAAGAAAAGTGGTTCAGTCTTTAAGGGGCTAATCACCAATCTTGAGGTGATGATCAAGAGGGTGAGATTCGAAGGCACGCGCCGGGTAATTGATTTTCATTCTAAGATCAACCACATCAATATTGTGAACTTACTTGGTGTTTGTTATGATGAGAGTGATTTATCATGGTCATATTTGGTCTTTGAGTGGCCTAAAAATGGGTGCTTAAGGGACTGCTTATCTGATGGATCCAACCTTCTCTGTTGGAAACAGAGGACACAAATAGCTTTTGACATAGCCACAGTTCTTCACTATTTACACTGTTGTGCTTTTCCTTCTTATGCTCATTTGAATGTTAGCAGTCGAAATATATTTATCACAGAAGACTTTAGAGGAAAACTAGCAGATATTGCTGCACCAGAGAACCATGCTAGAGGTCTAGTTTCTGAGAAAGTTGACATTTTTGCATTTGGGGTTGTGTTACTTGAACTGGTCTCTGCAAGAGAGAATATTGAAGGGAAATTAGTGAAAGATTCTATGGGGTTTTTGGGGGAAGGAGGAGGAGGAGGAAATGAAGGCGGTTGCTTTGAAGGGTTGAGGAGTTTCATGGATCCTAATTTGAAGGAAGATTATCATCTTGCAGAGGCTCTGTGTTTGGCTGCTTTAGCAAAGGCTTGTGTAGCTGATGATCCCTTGCACAGACCAACCATGGATGATATCATGAAGGTCCTTGCAAAAATGGTTTCTCCACAACAGCCAGAGAAATAA 1800 0.4078 MVYLWFIALLCIISSSSAHQFYDSTNCSTDPDTYPGSRYTCKTPQDLCQTYLVFRSNQHFQKISEISKLFHNDPHTLLQENNHLNLNSSSQFIEAGKEVLIPVNCSCSGGFYQVSFRYVVPENTTFSEIACGVYEGLLKSSTLEQDNLNTTRAGDELNVPLRCACPDNSSSIGKKLKYLMTYPIILGDTDSAISAKFGISKENFREVNDLQQFSTLFPQTTALIPLRDDKIKIIDILDSSPAPTSGFLPTLPVAKTRKNRTSLYIASSVIVSLILIMAILVGVLYLKALRKWKSEGVRPLTPSTSIAMSPMRGSSTTSCLSPDLLAGIKYCLANYSIEELKMATKNFSEETKKSGSVFKGLITNLEVMIKRVRFEGTRRVIDFHSKINHINIVNLLGVCYDESDLSWSYLVFEWPKNGCLRDCLSDGSNLLCWKQRTQIAFDIATVLHYLHCCAFPSYAHLNVSSRNIFITEDFRGKLADIAAPENHARGLVSEKVDIFAFGVVLLELVSARENIEGKLVKDSMGFLGEGGGGGNEGGCFEGLRSFMDPNLKEDYHLAEALCLAALAKACVADDPLHRPTMDDIMKVLAKMVSPQQPEK 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00331 599 Pfam LysM domain 187 218 IPR018392 -
Accr13g00331 599 Pfam Protein tyrosine and serine/threonine kinase 381 481 IPR001245 GO:0004672|GO:0006468
Accr13g00331 599 SUPERFAMILY Protein kinase-like (PK-like) 334 588 IPR011009 -
Accr13g00331 599 ProSiteProfiles Protein kinase domain profile. 306 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00331 599 Gene3D Transferase(Phosphotransferase) domain 1 353 481 - -
Accr13g00331 599 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 594 - -
Accr13g00331 599 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Accr13g00331 599 Gene3D Transferase(Phosphotransferase) domain 1 482 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00331 Accr-Chr13 3222369 3224168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00331 3 596 Receptor kinase-like Gene Family AT2G23770 30.094 5.25e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Accr13g00331 PK_Tyr_Ser-Thr 4.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00331 - - lja:Lj1g3v4047410.1 621.698