Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00308 ATGAAGGATTCTTGGTTTTTTGACAAGAATTTTAACGGTTTGTCGGATGAAATTTTTTATGATGTCATCAAATATTTTGACTTCCCGCTGGAAGATGTGGAACCTAATGCCATAGATGAAGATTGGGATGCCCAATTCAAACACCTTGAAGAGCCATATTTTGATGTTCCCTCCGTGTCACCTTCTGGGTTGTGTGATAAGACTCGAAAAGGCAATCCAAAACTTGAGAGGATCTCTACTTCTCGTGCTGAGATTTCCCCAATGCAACAAGGGCCGGAGACTACTAAGCTGACGTATATCAAAACCATTCCCAACCCAAGAGTATCTTCCAACGGCAACGATTTCCTCAAATTTCAAATCTACAGCCCAGTCTCTGTTTTTGAAAGCAGTAGTTCTTCATCAGGTGAGAATGCCTTTGACCAGCCTGCCATCCGAAAGCGAGCTCGTAGCAAACGCCGCCCTGTTTCAAGCCTCAGCCCTCTTTTCTCAGTTCCTTTCATCTCTTCTTCACAAGCTCGCCAAAAGCCTCAAAGGGCAGCCACTGCTGAATCGAATTTTGAAACACTCCTTACTTGGGATTGGATACCATGTTATGGTCCCAAAGAGAAGCAGCACAAAAAAGCTCTCTCTGTTCCCTCTAGTCGTATTAATATGAAGAGATCATCATGGCAGCAGTCAATCATCCACAGAAAATGCATGCATTGTCAGGTTACAAAGACCCCTCAGTGGAGGGAGGGTCCTATGGGCCCAAAAACCCTATGCAATGCATGTGGGGTTCGATACCGGTCCGGCCGCCTCTATCCTGAATACCGGCCATCCGGAAGTCCAGCTTTTGTGGCATCATTGCACTCTAACTGTCACAAGAAGGTCTTAGAGTTGAGAAACAGAGCTATCAGTGAAGCTGATGAAGGTTCTATGTTGCCTTTGTCTTCAGAACCTTGA 942 0.4522 MKDSWFFDKNFNGLSDEIFYDVIKYFDFPLEDVEPNAIDEDWDAQFKHLEEPYFDVPSVSPSGLCDKTRKGNPKLERISTSRAEISPMQQGPETTKLTYIKTIPNPRVSSNGNDFLKFQIYSPVSVFESSSSSSGENAFDQPAIRKRARSKRRPVSSLSPLFSVPFISSSQARQKPQRAATAESNFETLLTWDWIPCYGPKEKQHKKALSVPSSRINMKRSSWQQSIIHRKCMHCQVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPSGSPAFVASLHSNCHKKVLELRNRAISEADEGSMLPLSSEP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00308 313 CDD ZnF_GATA 231 276 IPR000679 GO:0006355|GO:0043565
Accr13g00308 313 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355|GO:0043565
Accr13g00308 313 SMART GATA_3 226 276 IPR000679 GO:0006355|GO:0043565
Accr13g00308 313 Gene3D - 227 275 IPR013088 GO:0006355|GO:0008270
Accr13g00308 313 ProSiteProfiles GATA-type zinc finger domain profile. 230 262 IPR000679 GO:0006355|GO:0043565
Accr13g00308 313 FunFam GATA transcription factor 226 276 - -
Accr13g00308 313 Pfam GATA zinc finger 232 265 IPR000679 GO:0006355|GO:0043565
Accr13g00308 313 PANTHER GATA TRANSCRIPTION FACTOR 95 301 - -
Accr13g00308 313 MobiDBLite consensus disorder prediction 131 152 - -
Accr13g00308 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00308 Accr-Chr13 3004153 3006373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00308 8 307 C2C2-Gata Transcription Factor Family AT1G08010 35.897 2.36e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr13g00308 GATA 5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00308 - - pcin:129312873 487.648