Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00307 ATGAAGGAAGAAGCTGAGAAAAGCTTGGATCCACAACTATGGCACGCTTGTGCCGGCGGTATGGTTCAGATGCCGTCTCTGAACTCCAAAGTTTTCTACTTTCCTCAAGGACACGCCGAGCACGCTCAGGCCGGCGTCGATTTCGCGGCGGCCTCCTTGAGGATTCCACCACTCGTTCTCTGCCGCGTGGCAGCCGTGAAATTCCTTGCCGACCCAGAAACCGACGAGGTCTTTGCCAAGTTCAAGTTGATTCCTTTGAGAAACTCCGAGCTAGATGACGCCGACGGCGACGAAAACACTCACGGCTCTGAGAATTCCGAGAAGCCCGCGTCTTTCGCCAAGACCTTAACCCAGTCCGATGCTAACAATGGTGGAGGCTTCTCTGTTCCGAGATACTGCGCAGAGACTATATTCCCACGGCTCGATTACTCGACTGAGCCGCCGGTTCAAACAGTGATTGCGAAGGACGTCCACGGCGAAATTTGGAAGTTCAGGCATATCTACAGAGGGACACCTCGCCGTCACTTGCTGACAACAGGGTGGAGTACTTTCGTTAACCAGAAGAAACTCGTTGCAGGGGACTCTGTTGTGTTCCTGAGGGCCGAAAACGGCGATCTCTGTGTCGGGATTCGCCGTGCAAAGCGTGGGATCGGCGTCGGGTCCGATGGCATATCCGGTTGGAGCTCCGGCGCCGGAGGGAACTGTGTGGGGCCTTATGGGGCTCTCAGTGTGTTGCTCAGAGAAGAAAACAAGCTTCTCCGAAACAATTCAAATGTTGGGAATCCTGGGAGAGGCAGAGTGAGACCAGAATCTGTGATGGAAGCTGTAACACTTGCTGCTAACGGTCTTGCATTTGAGGTTGTTTATTACCCAAGAGCAAGTACTCCTGAGTTTTGCGTGAAAGCTGAGGCTGTTAAAGCAGCCATGAGAATTCAATGGTGTTCTGGGATGAGGTTTAAGATGGCCTTTGAGACAGAGGATTCTTCCAGGATTAGCTGGTTCATGGGCACTGTTGCTTTTGTTCAAGTTGTTGATCCTATTCGCTGGCCCAATTCTCCTTGGAGACTTCTTCAGGTTTCTTGGGATGAGCCAGATTTGTTACAGAATGTGAAGAGGGTAAGTCCATGGTTAGTTGAACTGGTGTCGAACAGGCCGGTGATTCCTCTCATGCCGTTCTCTCCTCCTCGGAAGAAGATGCGGCTTCCTCAACACCCAGACTTCCCCTTTGATGGTCCCTTTACGATACCAACATTTCCCGGTGGCAACCCCCTCGGGCCCAGCAGCCCCTTGTGTTGTCTTTCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTCTTTCAGATCTCCACCTAAACAATAAGCTGCAGTTGGGGCTGCTTTCGAATAATAACATCCAGCAGCTTGACGTGCATCATCATCATCCTGGGATTTCTGATGGCAACATAATGATGAGCCATGACAAGAAAAATGAGAGCTTGTCATGCTTGCTTACCATGGGAAATTCTAACAGGAGTTTGGAGCAATCTGATAATGTTGTTGTCAAGAGACACCAGTTTCTGCTTTTTGGACAGCCAATTCTGACTGAGCAACAAATTTCTCAAAGCTGTCATGCTGAAGTGTGGTCTCAGAACTTTTCGCGTAAGGATAAGGCAAAGAGCTTCTTTGGTGGATCCCAATCTGCGGTTTCACAGCCGGGATTGTCTTCTACAACGGACTTCTCTTGGCAACTTGGCTTGGACACAGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGACGTGGGGCGCACTCTAGACCTTTCATGTCTCAGCTCTTATGAAGAGCTGTACCGGAAACTGGCTGACATGTTCGGACTTGAAAGATCTGAGATGTTGAGCCGTGTGCTTTACCGAGATGCTTCTGGTGCTATCAAACGAACTGGAGAAGAACCCTTCAGCGACTTCATGAAAACAGCAAAAAGATTGACAATTCTGACAGATTCGGGCGGCAAAGATATTAGGAGGGCGTGGATGACGGGATCTCGAAATGGAGATCATGGACTGGATGCATCAAACAAGACAGGCTTTCTGAGCATATTTGCCTAA 2103 0.4988 MKEEAEKSLDPQLWHACAGGMVQMPSLNSKVFYFPQGHAEHAQAGVDFAAASLRIPPLVLCRVAAVKFLADPETDEVFAKFKLIPLRNSELDDADGDENTHGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSTEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGVGSDGISGWSSGAGGNCVGPYGALSVLLREENKLLRNNSNVGNPGRGRVRPESVMEAVTLAANGLAFEVVYYPRASTPEFCVKAEAVKAAMRIQWCSGMRFKMAFETEDSSRISWFMGTVAFVQVVDPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNRPVIPLMPFSPPRKKMRLPQHPDFPFDGPFTIPTFPGGNPLGPSSPLCCLSDNAPAGIQGARHAQFGISLSDLHLNNKLQLGLLSNNNIQQLDVHHHHPGISDGNIMMSHDKKNESLSCLLTMGNSNRSLEQSDNVVVKRHQFLLFGQPILTEQQISQSCHAEVWSQNFSRKDKAKSFFGGSQSAVSQPGLSSTTDFSWQLGLDTGHCKVFLESEDVGRTLDLSCLSSYEELYRKLADMFGLERSEMLSRVLYRDASGAIKRTGEEPFSDFMKTAKRLTILTDSGGKDIRRAWMTGSRNGDHGLDASNKTGFLSIFA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00307 700 FunFam Auxin response factor 313 386 - -
Accr13g00307 700 ProSiteProfiles PB1 domain profile. 588 668 IPR000270 GO:0005515
Accr13g00307 700 FunFam Auxin response factor 110 214 - -
Accr13g00307 700 Gene3D - 587 672 - -
Accr13g00307 700 Gene3D - 313 385 - -
Accr13g00307 700 Gene3D - 110 214 IPR015300 -
Accr13g00307 700 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Accr13g00307 700 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Accr13g00307 700 CDD B3_DNA 111 212 IPR003340 GO:0003677
Accr13g00307 700 SMART B3_2 112 214 IPR003340 GO:0003677
Accr13g00307 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 667 IPR044835 GO:0003677|GO:0006355|GO:0009725
Accr13g00307 700 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Accr13g00307 700 SUPERFAMILY DNA-binding pseudobarrel domain 105 215 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00307 Accr-Chr13 2980587 2983371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00307 1 672 B3 DNA Binding Superfamily AT4G30080 60.730 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Accr13g00307 B3 2.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00307 - - qsa:O6P43_028379 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03451 1 71079953 71082814 Accr13g00307 13 2980587 2983371 CCT