Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00303 ATGGCGATGGCTGTGGCTCACCACAGAGAAAGCAGCAGCGGGAGCATCGGCAAGCACCTTGATTCCGGCAAGTATGTCCGATACACAGCGGATCAGGTTGAAGCGCTCGAACGCGTTTACGCTGAGTGCCCGAAGCCCAGCTCCTTGCGAAGGCAACAGCTGATCCGAGAGTGCCCTATTCTAGCCAACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGAAGGTGCAGAGAGAAGCAGAGAAAAGAGGCGGGAAGACTCCAGACGGTGAACAGAAAACTCTCTGCGATGAACAAGTTGTTGATGGAGGAAAATGAGCGGTTGCAAAAGCAGGTTTCCCAACTAGTATGCGAAAATGGGTTCATGAGGCAGCAACTGCATACTGCGTCAGCAGCAACTACTGATGCAAGTTGTGATTCGGTGGTTACCACACCTCAACACCCCATAAGAGATGCCAATAATCCTGCTGGACTCCTGTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCCACCGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCGCGGAGTTGCAGTGGAGTGGCTGCGCGGGCATGCGGTCTTGTTAGTTTAGAACCTACAAAGATCGCAGAGATCCTAAAAGATCGTCCATCTTGGTTCCGGGATTGCCGGAGTCTTGAAGTATTCACAATGTTCCCTGCCGGCAATGGTGGGACAATTGAACTCATTTACACACAGACATATGCTCCAACTACACTGGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAAGTCTGGACAATGGAAGTCTTGTGGTTTGTGAGAGATCACTGTCTGGTTCAGGTGCTGGCCCTAATGCAGCAGCCGCAGCTCAGTTTGTAAGAGGTGAAATGTTCCCTAGCGGCTACCTGATTCGACCATGTGAAGGTGGAGGATCAATCATTCATATTGTAGACCACTTAAACCTCGAGGCATGGAGTGTGCCAGAGGTTCTTAGACCCCTCTATGAATCGTCAAAAGTGGTGGCTCAAAAAATGACAATTGCAGCGCTACGCTATATTAGGCAAATCGCTCAGGAAACAAGTGGCGAAGTTGTTTATGGTTTAGGCAGACAACCAGCTGTTCTGCGAACTTTCAGCCAAAGGCTAAGCAGAGGCTTCAATGACGCTGTCAATGGATTTAATGATGACGGCTGGTCCATATTGAATTGTGATAGTGCTGAGGACGTGGTTATCGCAGTCAACTCAACCAAGAATCTCAGTGCCACTTGTATTCCTGCAAGTTCCCTAACATTCCCTGGAGGAGTTATCTGTGCAAAAGCTTCCATGTTGCTCCAGAATGTTCCTCCGGCAGTCTTGGTTCGGTTTCTGAGGGAGCATCGCTCTGAGTGGGCTGATTTCAATGTTGATGCCTACTCTGCTGCATCTCTTAAAGCAGGTTGCTTTGCCTATCCTGGGATGAGGTCAACTAGATTCACTGGAAGTCAAATTATCATGCCTCTTGGGCATACAATTGAACATGAAGAGATGCTTGAAGTTGTTCGTCTTGAAGGCCACTCTCTAGTTCAGGAGGATTCTTTTGCTTCAAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAAAATGCTGTTGGGGCTTGTTCTGAGCTTGTATTTGCTTCCATCGATGAAATGTTCCCTGATGATGCTCCATTGTTGCCATCTGGTTTCCGCATCATCCCATTGGATTCAAAATCAGGTGATAAGAAGAATGCAGTATCTGTAAATCGGACCCTAGACTTGACATCTGGTCTTGATGTGGGCCCTGCAACAAATCATGCTGCAGAAGATTCATCTTCATGCCATAATACTCGGTCGGTATTGACTATTGCCTTCCAGTTTCCCTTTGAGAGCAGCTTGCAGGAAAACATTGCAATTATGGCACGGCAGTATGTGCGCAGTGTGATTTCATCTGTGCAGAGGGTTGCCTTGGCTATATCTCCATCTGGTATAAGCCCAACTGTGGGACCAAAACTCAGTCCTGGCTCTCCTGAAGCAGTAACTCTAGCTCACTGGATATGCCAGAGTTATAGTTTCTATATGGGAGCAGAATTACTGCAATCCGATTCTCTTGTTGGCGATTTGTTGCTGAAACAACTATGGCATCATCAGGATGCCATTTTGTGTTGTTCAGTGAGGTCCATGCCTGTGTTCATCTTTGCAAACCAGGCAGGGCTTGACATGCTGGAAACAACCCTAGTAGCTCTGCAAGATATCACATTGGATAAAATATTTGATGACCCTGGACGCAAGGCATTGTATACAGAATTCGCCAAGTTGATGCAGGAGGGGTTTGCTTATCTGCCTGCTGGAATTTGCATGTCGATGATGGGACGGCATGTTTCATACGAACAAGCACTTGCATGGAAAGTTCTTGCTGAAGATAACAGTGTTCATTGCTTGGCATTCTCTTTCTTAAATTGGTCATTTGTATGA 2526 0.4727 MAMAVAHHRESSSGSIGKHLDSGKYVRYTADQVEALERVYAECPKPSSLRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKEAGRLQTVNRKLSAMNKLLMEENERLQKQVSQLVCENGFMRQQLHTASAATTDASCDSVVTTPQHPIRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISRSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNAAAAAQFVRGEMFPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSILNCDSAEDVVIAVNSTKNLSATCIPASSLTFPGGVICAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGCFAYPGMRSTRFTGSQIIMPLGHTIEHEEMLEVVRLEGHSLVQEDSFASRDIHLLQICSGIDENAVGACSELVFASIDEMFPDDAPLLPSGFRIIPLDSKSGDKKNAVSVNRTLDLTSGLDVGPATNHAAEDSSSCHNTRSVLTIAFQFPFESSLQENIAIMARQYVRSVISSVQRVALAISPSGISPTVGPKLSPGSPEAVTLAHWICQSYSFYMGAELLQSDSLVGDLLLKQLWHHQDAILCCSVRSMPVFIFANQAGLDMLETTLVALQDITLDKIFDDPGRKALYTEFAKLMQEGFAYLPAGICMSMMGRHVSYEQALAWKVLAEDNSVHCLAFSFLNWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00303 841 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Accr13g00303 841 CDD bZIP 76 115 - -
Accr13g00303 841 Gene3D - 198 379 IPR023393 -
Accr13g00303 841 SUPERFAMILY Homeodomain-like 23 86 IPR009057 -
Accr13g00303 841 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
Accr13g00303 841 SUPERFAMILY Bet v1-like 162 374 - -
Accr13g00303 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 841 IPR044830 GO:0003700
Accr13g00303 841 Coils Coil 89 120 - -
Accr13g00303 841 SMART START_1 162 372 IPR002913 GO:0008289
Accr13g00303 841 Pfam MEKHLA domain 698 840 IPR013978 -
Accr13g00303 841 SMART HOX_1 21 87 IPR001356 GO:0003677
Accr13g00303 841 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Accr13g00303 841 Gene3D - 18 88 - -
Accr13g00303 841 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Accr13g00303 841 CDD homeodomain 24 84 IPR001356 GO:0003677
Accr13g00303 841 Pfam START domain 163 370 IPR002913 GO:0008289
Accr13g00303 841 CDD START_ArGLABRA2_like 157 373 - -
Accr13g00303 841 SUPERFAMILY Bet v1-like 407 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00303 Accr-Chr13 2922981 2943616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00303 1 841 Homeobox Transcription Factor Family AT5G60690 81.132 0.0 1429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr13g00303 START 9e-48 CL0209