Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00297 ATGACGAAGGACGTGGAGGTTCAAGAACAAGGAGAGTTCTCCGCGAAGGACTACCACGAGCCACCGCCGGCCCCGTTGATCGACCCGGAGGAGCTGGGGAAGTGGTCGTTTTACAGGGCGTTGATAGCAGAGTTCGTGGCGACTCTGCTTTTCTTGTACGTAACTGTGTTGACGATTATTGGCCAGAACAGCTCCACGGACTCTAAAAAGAACAACACCGCCTGTGACGGCGTCGGTGTCTTGGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTTCTTGGGCGGAAGGTGTCGCTGATAAGAGCGTTCTTGTACATGGTGGCACAGTGCGCCGGAGCAATCTGCGGCACCGGACTCGCCAAGGCCTTCCAAACAGCCTACTACGACGAGTACGGGGGCGGCGCCAACGTCGTCCAGCAGGGCTACAGCAAGGGTACCGCCTTGGGCGCTGAGATCATCGGCACCTTCGTCCTCGTCTACACCGTCTTCGCCGCAACTGATCCCAAACGCAACGCCCGTGACTCCCATGTTCCTGTGTTGGCTCCACTTCCCATTGGATTCGCCGTGTTCATGGTTCACTTGGCTACAATTCCGGTCACCGGCACCGGTATCAATCCTGCAAGGAGTTTTGGAGCTGCTGTGATCTATAACCAAGACAAGGCCTGGGATGATCAATGGATTTTCTGGGTTGGCCCAGCAATTGGAGCCTTAGCTGCTGCCATATACCACCAGTATATCCTCAGAGCCGGGGCCATTAAAGCTCTTGGATCCTTCAGGAGCAACAACTAA 858 0.5606 MTKDVEVQEQGEFSAKDYHEPPPAPLIDPEELGKWSFYRALIAEFVATLLFLYVTVLTIIGQNSSTDSKKNNTACDGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAFLYMVAQCAGAICGTGLAKAFQTAYYDEYGGGANVVQQGYSKGTALGAEIIGTFVLVYTVFAATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNQDKAWDDQWIFWVGPAIGALAAAIYHQYILRAGAIKALGSFRSNN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00297 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Accr13g00297 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Accr13g00297 285 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 274 IPR034294 -
Accr13g00297 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Accr13g00297 285 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00297 285 FunFam Probable aquaporin PIP1-2 24 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00297 Accr-Chr13 2853255 2855392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00297 1 283 Major Intrinsic Protein MIP AT5G60660 77.032 9.95e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00297 K09872 - gmx:100811119 505.368