Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00287 ATGGGAATAAGTGAAGAGTCCACACATACTCGTCGCTGGAAGAGAGAAAATCTTTCACTACAAATACCCTCAAGAACATCAGAAGAGTCTTTTCAAGATTTTGTAACAAACAAGATGCCTCAGACCCCAAGTCCTACCCCAACTCCCAAGAGAGTGAATTTTCTGGTGACACCTCTCTCTGTCGATACCTCCATTAATAAGTCTCCAGGACCTTCAACGTCAAGAGGAAGACCATCCATAAGAAGTCTCTTTCCAAAACTGAACTTTATTTCTCGGCCGGCATCAGACGTTGAAAAAGGTTCTACTGCAGCTTCAGAAGGTTCCTCTTCAGCCACTCGAGAAAAGCCTTCAATCTCAAGAACCTTGTCCCTTACTAAACTATTTACTCCCAGGATTAAGAGGACCTCTTCCTTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCATGCTGGAACTGTTGGCACTCCTATGCAGAGAAGCTCTGCTCAGAGGCAGATAGTTCGCTCTCTTTCGGTGCCTGCCAACATTAAAGAGAAAAGCTTGAGGAGAATGGATTCATTTTTCCGTATTGTTCCTTCCACCCCACGAGTGAAGGATGGAGTTGAATTACCAACAGCATCCCCTTCAAAGGATTCTGAAAACGATGTTGCCGATGGTGAAGATATAGCCGAAGAAGAGGCTGTATGTAGAATTTGTATGATTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGGGAACTTGCTCTATCACACCAAGAATGTGCTATTAAGTGGTTTAGCATGAAAGGAAATAAAACATGTGATGTATGCAAGGAGGAGGTTAGGAACTTACCGGTCACTCTTCTGCGGATCCAAAGTGTCCGGGCTCGACAAACTGGAGCAAGCAGGTCTCATCTGGACGATGTGAATGAATATAGGGTTTGGCAAGAAGTGCCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGTAAACTGGGTACTAATGCAATTGCCATGTCTCTTCCGTTTTCATGCGTATTGGGTCTTCTCTCTTCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATTTATGCATCAGCTCAGTTTGCTCTGGTGGTTCTCTTTGCTCATATATTTTACTCCTTGGTAATTGCGAAAGATGTACGCTTCGTCCATAATATACATGTGCAGGCAATACTGTCAATACTTCTTGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGCTCAATTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTTATCAGAACAGAATAATAATAATGGTGCTCAAGTGATGGCGGCTCATCCAGGCTCTTCGACAGCCAGGGCAGCACAGAATCACCAAAACTCAAGTCATATTGTCACAGGCTAA 1452 0.4401 MGISEESTHTRRWKRENLSLQIPSRTSEESFQDFVTNKMPQTPSPTPTPKRVNFLVTPLSVDTSINKSPGPSTSRGRPSIRSLFPKLNFISRPASDVEKGSTAASEGSSSATREKPSISRTLSLTKLFTPRIKRTSSLPVDEFAHSNSESAHAGTVGTPMQRSSAQRQIVRSLSVPANIKEKSLRRMDSFFRIVPSTPRVKDGVELPTASPSKDSENDVADGEDIAEEEAVCRICMIDLCEGGETFKLECSCKGELALSHQECAIKWFSMKGNKTCDVCKEEVRNLPVTLLRIQSVRARQTGASRSHLDDVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKLGTNAIAMSLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLVIAKDVRFVHNIHVQAILSILLATFAGFGVVMSGSSILVEFFRWRRRWQALSEQNNNNGAQVMAAHPGSSTARAAQNHQNSSHIVTG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00287 483 ProSiteProfiles Zinc finger RING-CH-type profile. 224 286 IPR011016 GO:0008270
Accr13g00287 483 MobiDBLite consensus disorder prediction 1 81 - -
Accr13g00287 483 MobiDBLite consensus disorder prediction 139 168 - -
Accr13g00287 483 MobiDBLite consensus disorder prediction 140 168 - -
Accr13g00287 483 MobiDBLite consensus disorder prediction 19 41 - -
Accr13g00287 483 SMART ringv_2 231 280 IPR011016 GO:0008270
Accr13g00287 483 MobiDBLite consensus disorder prediction 201 222 - -
Accr13g00287 483 SUPERFAMILY RING/U-box 228 283 - -
Accr13g00287 483 MobiDBLite consensus disorder prediction 48 79 - -
Accr13g00287 483 Pfam RING-variant domain 232 279 IPR011016 GO:0008270
Accr13g00287 483 MobiDBLite consensus disorder prediction 95 118 - -
Accr13g00287 483 CDD RING_CH-C4HC3_MARCH 232 280 - -
Accr13g00287 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 287 IPR013083 -
Accr13g00287 483 MobiDBLite consensus disorder prediction 101 118 - -
Accr13g00287 483 PANTHER OS02G0165000 PROTEIN 10 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00287 Accr-Chr13 2774798 2777476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00287 218 286 C3H Transcription Factor Family AT2G37950 41.429 7.77e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00287 - - qsa:O6P43_000316 630.172