Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00286 ATGAGGACAGAGCAAAAGCCAATGAGTGAAGGACAAGATGCCGTTTCTTGTCAAAGAACATCTTCTCTTTCAGTTCACAAGGTTGATGATACAATGGGAATAAGTGAAGAGTCCACACATACTCGTCGCTGGAAGAGAGAAAATCTTTCACTACAAATACCCTCAAGAACATCAGAAGAGTCTTTTCAAGATTTTGTAACAAACAAGATGCCTCAGACCCCAAGTCCTACCCCAACTCCCAAGAGAGTGAATTTTCTGGTGACACCTCTCTCTGTCGATACCTCCATTAATAAGTCTCCAGGACCTTCAACGTCAAGAGGAAGACCATCCATAAGAAGTCTCTTTCCAAAACTGAACTTTATTTCTCGGCCGGCATCAGACGTTGAAAAAGGTTCTACTGCAGCTTCAGAAGGTTCCTCTTCAGCCACTCGAGAAAAGCCTTCAATCTCAAGAACCTTGTCCCTTACTAAACTATTTACTCCCAGGATTAAGAGGACCTCTTCCTTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCATGCTGGAACTGTTGGCACTCCTATGCAGAGAAGCTCTGCTCAGAGGCAGATAGTTCGCTCTCTTTCGGTGCCTGCCAACATTAAAGAGAAAAGCTTGAGGAGAATGGATTCATTTTTCCGTATTGTTCCTTCCACCCCACGAGTGAAGGATGGAGTTGAATTACCAACAGCATCCCCTTCAAAGGATTCTGAAAACGATGTTGCCGATGGTGAAGATATAGCCGAAGAAGAGGCTGTATGTAGAATTTGTATGATTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGGGAACTTGCTCTATCACACCAAGAATGTGCTATTAAGTGGTTTAGCATGAAAGGAAATAAAACATGTGATGTATGCAAGGAGGAGGTTAGGAACTTACCGGTCACTCTTCTGCGGATCCAAAGTGTCCGGGCTCGACAAACTGGAGCAAGCAGGTCTCATCTGGACGATGTGAATGAATATAGGGTTTGGCAAGAAGTGCCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGTAAACTGGGTACTAATGCAATTGCCATGTCTCTTCCGTTTTCATGCGTATTGGGTCTTCTCTCTTCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATTTATGCATCAGCTCAGTTTGCTCTGGTGGTTCTCTTTGCTCATATATTTTACTCCTTGATACATGTGCAGGCAATACTGTCAATACTTCTTGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGCTCAATTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTTATCAGAACAGAATAATAATAATGGTGCTCAAGTGATGGCGGCTCATCCAGGCTCTTCGACAGCCAGGGCAGCACAGAATCACCAAAACTCAAGTCATATTGTCACAGGCTAA 1512 0.4392 MRTEQKPMSEGQDAVSCQRTSSLSVHKVDDTMGISEESTHTRRWKRENLSLQIPSRTSEESFQDFVTNKMPQTPSPTPTPKRVNFLVTPLSVDTSINKSPGPSTSRGRPSIRSLFPKLNFISRPASDVEKGSTAASEGSSSATREKPSISRTLSLTKLFTPRIKRTSSLPVDEFAHSNSESAHAGTVGTPMQRSSAQRQIVRSLSVPANIKEKSLRRMDSFFRIVPSTPRVKDGVELPTASPSKDSENDVADGEDIAEEEAVCRICMIDLCEGGETFKLECSCKGELALSHQECAIKWFSMKGNKTCDVCKEEVRNLPVTLLRIQSVRARQTGASRSHLDDVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKLGTNAIAMSLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLIHVQAILSILLATFAGFGVVMSGSSILVEFFRWRRRWQALSEQNNNNGAQVMAAHPGSSTARAAQNHQNSSHIVTG 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00286 503 CDD RING_CH-C4HC3_MARCH 263 311 - -
Accr13g00286 503 MobiDBLite consensus disorder prediction 9 28 - -
Accr13g00286 503 PANTHER OS02G0165000 PROTEIN 23 475 - -
Accr13g00286 503 MobiDBLite consensus disorder prediction 171 200 - -
Accr13g00286 503 MobiDBLite consensus disorder prediction 50 72 - -
Accr13g00286 503 MobiDBLite consensus disorder prediction 93 112 - -
Accr13g00286 503 SMART ringv_2 262 311 IPR011016 GO:0008270
Accr13g00286 503 MobiDBLite consensus disorder prediction 30 49 - -
Accr13g00286 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 318 IPR013083 -
Accr13g00286 503 MobiDBLite consensus disorder prediction 170 200 - -
Accr13g00286 503 MobiDBLite consensus disorder prediction 232 253 - -
Accr13g00286 503 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Accr13g00286 503 MobiDBLite consensus disorder prediction 1 82 - -
Accr13g00286 503 MobiDBLite consensus disorder prediction 132 149 - -
Accr13g00286 503 SUPERFAMILY RING/U-box 259 314 - -
Accr13g00286 503 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Accr13g00286 503 MobiDBLite consensus disorder prediction 126 149 - -
Accr13g00286 503 MobiDBLite consensus disorder prediction 93 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00286 Accr-Chr13 2773980 2777476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00286 249 317 C3H Transcription Factor Family AT2G37950 41.429 8.46e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00286 - - gmx:100815566 669.077