Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00285 ATGAGGACAGAGCAAAAGCCAATGAGTGAAGGACAAGATGCCGTTTCTTGTCAAAGAACATCTTCTCTTTCAGTTCACAAGGTTGATGATACAATGGGAATAAGTGAAGAGTCCACACATACTCGTCGCTGGAAGAGAGAAAATCTTTCACTACAAATACCCTCAAGAACATCAGAAGAGTCTTTTCAAGATTTTGTAACAAACAAGATGCCTCAGACCCCAAGTCCTACCCCAACTCCCAAGAGAGTGAATTTTCTGGTGACACCTCTCTCTGTCGATACCTCCATTAATAAGTCTCCAGGACCTTCAACGTCAAGAGGAAGACCATCCATAAGAAGTCTCTTTCCAAAACTGAACTTTATTTCTCGGCCGGCATCAGACGTTGAAAAAGGTTCTACTGCAGCTTCAGAAGGTTCCTCTTCAGCCACTCGAGAAAAGCCTTCAATCTCAAGAACCTTGTCCCTTACTAAACTATTTACTCCCAGGATTAAGAGGACCTCTTCCTTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCATGCTGGAACTGTTGGCACTCCTATGCAGAGAAGCTCTGCTCAGAGGCAGATAGTTCGCTCTCTTTCGGTGCCTGCCAACATTAAAGAGAAAAGCTTGAGGAGAATGGATTCATTTTTCCGTATTGTTCCTTCCACCCCACGAGTGAAGGATGGAGTTGAATTACCAACAGCATCCCCTTCAAAGGATTCTGAAAACGATGTTGCCGATGGTGAAGATATAGCCGAAGAAGAGGCTGTATGTAGAATTTGTATGATTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGGGAACTTGCTCTATCACACCAAGAATGTGCTATTAAGTGGTTTAGCATGAAAGGAAATAAAACATGTGATGTATGCAAGGAGGAGGTTAGGAACTTACCGGTCACTCTTCTGCGGATCCAAAGTGTCCGGGCTCGACAAACTGGAGCAAGCAGGTCTCATCTGGACGATGTGAATGAATATAGGGTTTGGCAAGAAGTGCCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGTAAACTGGGTACTAATGCAATTGCCATGTCTCTTCCGTTTTCATGCGTATTGGGTCTTCTCTCTTCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATTTATGCATCAGCTCAGTTTGCTCTGGTGGTTCTCTTTGCTCATATATTTTACTCCTTGGTAATTGCGAAAGATATACATGTGCAGGCAATACTGTCAATACTTCTTGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGCTCAATTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTTATCAGAACAGAATAATAATAATGGTGCTCAAGTGATGGCGGCTCATCCAGGCTCTTCGACAGCCAGGGCAGCACAGAATCACCAAAACTCAAGTCATATTGTCACAGGCTAA 1527 0.4381 MRTEQKPMSEGQDAVSCQRTSSLSVHKVDDTMGISEESTHTRRWKRENLSLQIPSRTSEESFQDFVTNKMPQTPSPTPTPKRVNFLVTPLSVDTSINKSPGPSTSRGRPSIRSLFPKLNFISRPASDVEKGSTAASEGSSSATREKPSISRTLSLTKLFTPRIKRTSSLPVDEFAHSNSESAHAGTVGTPMQRSSAQRQIVRSLSVPANIKEKSLRRMDSFFRIVPSTPRVKDGVELPTASPSKDSENDVADGEDIAEEEAVCRICMIDLCEGGETFKLECSCKGELALSHQECAIKWFSMKGNKTCDVCKEEVRNLPVTLLRIQSVRARQTGASRSHLDDVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKLGTNAIAMSLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLVIAKDIHVQAILSILLATFAGFGVVMSGSSILVEFFRWRRRWQALSEQNNNNGAQVMAAHPGSSTARAAQNHQNSSHIVTG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00285 508 CDD RING_CH-C4HC3_MARCH 263 311 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 9 28 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 50 72 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 171 200 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 93 112 - -
Accr13g00285 508 SMART ringv_2 262 311 IPR011016 GO:0008270
Accr13g00285 508 MobiDBLite consensus disorder prediction 30 49 - -
Accr13g00285 508 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Accr13g00285 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 318 IPR013083 -
Accr13g00285 508 MobiDBLite consensus disorder prediction 232 253 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 170 200 - -
Accr13g00285 508 PANTHER OS02G0165000 PROTEIN 23 480 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 1 82 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 132 149 - -
Accr13g00285 508 SUPERFAMILY RING/U-box 259 314 - -
Accr13g00285 508 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Accr13g00285 508 MobiDBLite consensus disorder prediction 126 149 - -
Accr13g00285 508 MobiDBLite consensus disorder prediction 93 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00285 Accr-Chr13 2773980 2777476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00285 249 317 C3H Transcription Factor Family AT2G37950 41.429 9.51e-13 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03461 1 71161152 71165740 Accr13g00285 13 2773980 2777476 CCT