Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00283 ATGGCGGAAACTGGAAATACTGAACTTTCACTTTCTCCCTCTAAAACCCTAAACCCTTCTGATCCAATCCACGGTTCTCACTTGCCCCAAGCGCCTGCTGTAAACGCTCAAATCCATCAGGAATCTTCGTTTCCCGCTGCCCAGCCTTCCGACGACGTCGTCTCGGGCGAGAAACGGAAACGAGAGGACTCAGAGTCGGGGGTCTCAGATCCTTCCCTCAGCCCCTTGTGGAAAACTAGCCTCTGTTCTTATTTCCGGCGACACGATGGCTCCTGCAGCCACGGGAGTGAGTGCCGCTATGCCCATGGTGAAGAGGAGCTTCGGCCTCGGCCCGATAACACCTGGGACCCAACGTCTGAGCGGGCGAAGAAGGCGATGAAATCCGAGACTGGTGAGAAATGTGCAGTTTCCATGGGTGTAATGATGACTGAGGCTGTGGTCGATGATGCTGATGGCGAGGACAATGATGATTCCAATCACGCTCTTAGCAAATGCTTGGTGCATTTGCCGAGGAAGTGGGTTTCGGACAACTTGAGGGGATTTCTCAGTCAAGAGGGTATACCTTTTAAATCTGCAAAGAAAAAGAAAGGCATGCTGGTAGGATTTGTCACTTTTGAAGATCAGGAACAGTTGAAGAGCTCAACAAAGGAGCTGGAAGGCAAATTGATTGGCAGCAAAAGTTTAAAAGTTGCAGATGTCATTCCTCGATCATTTGAAAAGAAATCAAATGTTACTCTTTGTGCAGAATCTGCACAAAATGGTGAGACTGCGGATAGTGAGACAGATGGTGCAAATTTGGTGGTTGGTGATTCCGTGCCGAAGACAAGAAGCCTCCGAGACGTAGTGACTCCTCTTGCTCATATGGCCTATGCTGATCAGTTAGAGCACAAAAAAGGCTCTCTCACACAGATCCTCAAAAAACTTACTAGAAATGCTCGCAAAGCTTGTCCAAGTGGCGTTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGTGGCCTTCCTTGCAAACTAGAAGGTATTATTGGATCGCCAAGGGTAAATGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAGTAACAGTAGGATTCATGCTAGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGGGGACTGCCCCAATGTTTCAAAAATTGCTCTCCAGCATGCTTCTATCTTTCAGGAATTTCTGCAGCAGTCACAGTTACCAGTCTGGAACAGATTTAAGAATAGCGGGTTTTGGCGTCAATTGACAGTTCGAGAAGGAAGGACAAATGGGAAGGTTGCTGATGCTGAAGATTTTGGTGGTATTGCAGAGGTCATGCTTATTGTTCAGGTTTCTACAAAGGGCTTTGATAAGGAGCTAGTAACTGGTGAATTTGCGAAACTTGCTCAAGCATTTGTTGCAGGAGCTAATGCATGTTCTCCATCATTGCCTCTCACGGCTCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCGCCAGCTGATGCCCCCCTGCAGTCACTTCTCACTCCTAAAGCAGTTGGTGATCAAATAAGTGAAAATGATGCCATGGATGTTAGGATCCATGATTATATCAGCAATCTCAAGTTTTCTATATCTCCGACTGCATTTTTCCAGGTCAACACTCTAGCTGCTGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGAAACGTTGCTATTTGATATATGCTGTGGGACGGGAACAATTGGCTTGACCTTAGCACATCGTGTTGGTATGGTGATTGGTGTTGAAATGAATGCTTCTGCAGTATCTGATGCTCAAAGGAACGCTGAGATTAACGGTATAAATAATTGTAGATTTATATGTGCAAAGGCCGAGGATGTGATGGGATCTTTGTTAAAGGAGCACCTAAATAAGCCTAAGGAACAAGTTAATGTTCCTAGTATCTGTGGAACTGATGTTGAGGAAGTCTCTGAAGGGAGTACATGCCCTGAAACTGAAAATGGTGAACAAGAATCTCAGTGTTCTGAAAATGGCAGGCAAGAAGATGAAATTGAGGCTCAGAGAGAGAGCGATTGTGAAAATGGGAATTCTTTGATGCAACAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCACGTGCTGGACTCCATCCAACTGTGATCAAAGCTCTGAGGACTAATCAAGGACTGCGGAGGCTTGTCTACATATCCTGTAATCCTGAGAGTTTGGTGGCAAATGCTATTGAACTTTGCACTCCATCTCCTTCGAAAATGGAAAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGGCTTGCAAGACACAGAGCCAAGTCTATGCCTATCTCAGAGGCCTTCCAACCCATAAAAGCCATGGCCGTTGATCTATTCCCACATACTGAACACTGTGAACTGGTGATGCTCCTCGAGAGGTAG 2466 0.4558 MAETGNTELSLSPSKTLNPSDPIHGSHLPQAPAVNAQIHQESSFPAAQPSDDVVSGEKRKREDSESGVSDPSLSPLWKTSLCSYFRRHDGSCSHGSECRYAHGEEELRPRPDNTWDPTSERAKKAMKSETGEKCAVSMGVMMTEAVVDDADGEDNDDSNHALSKCLVHLPRKWVSDNLRGFLSQEGIPFKSAKKKKGMLVGFVTFEDQEQLKSSTKELEGKLIGSKSLKVADVIPRSFEKKSNVTLCAESAQNGETADSETDGANLVVGDSVPKTRSLRDVVTPLAHMAYADQLEHKKGSLTQILKKLTRNARKACPSGVSLPEWILKSRDIGGLPCKLEGIIGSPRVNGYRNKCEFSVGYSVEGKVTVGFMLGNFREGVTAVEEAGDCPNVSKIALQHASIFQEFLQQSQLPVWNRFKNSGFWRQLTVREGRTNGKVADAEDFGGIAEVMLIVQVSTKGFDKELVTGEFAKLAQAFVAGANACSPSLPLTALVVQDHQGISNVAPADAPLQSLLTPKAVGDQISENDAMDVRIHDYISNLKFSISPTAFFQVNTLAAEKLYSLAGDWACLGPETLLFDICCGTGTIGLTLAHRVGMVIGVEMNASAVSDAQRNAEINGINNCRFICAKAEDVMGSLLKEHLNKPKEQVNVPSICGTDVEEVSEGSTCPETENGEQESQCSENGRQEDEIEAQRESDCENGNSLMQQFKNVVAIVDPPRAGLHPTVIKALRTNQGLRRLVYISCNPESLVANAIELCTPSPSKMEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLER 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00283 821 SMART c3hfinal6 76 104 IPR000571 GO:0046872
Accr13g00283 821 MobiDBLite consensus disorder prediction 33 49 - -
Accr13g00283 821 MobiDBLite consensus disorder prediction 53 67 - -
Accr13g00283 821 CDD AdoMet_MTases 579 633 - -
Accr13g00283 821 Coils Coil 291 311 - -
Accr13g00283 821 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 281 821 IPR010280 GO:0006396|GO:0008173
Accr13g00283 821 ProSitePatterns RNA methyltransferase trmA family signature 1. 716 748 IPR030390 -
Accr13g00283 821 MobiDBLite consensus disorder prediction 1 73 - -
Accr13g00283 821 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 104 IPR000571 GO:0046872
Accr13g00283 821 SUPERFAMILY RNA-binding domain, RBD 168 237 IPR035979 GO:0003676
Accr13g00283 821 Gene3D - 153 243 IPR012677 -
Accr13g00283 821 SUPERFAMILY CCCH zinc finger 75 109 IPR036855 GO:0046872
Accr13g00283 821 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 283 821 IPR029063 -
Accr13g00283 821 Gene3D - 70 110 - -
Accr13g00283 821 ProSiteProfiles Zinc finger C3H1-type profile. 76 105 IPR000571 GO:0046872
Accr13g00283 821 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 94 821 IPR045850 -
Accr13g00283 821 MobiDBLite consensus disorder prediction 105 130 - -
Accr13g00283 821 MobiDBLite consensus disorder prediction 1 23 - -
Accr13g00283 821 Pfam Methyltransferase domain 577 636 IPR025714 -
Accr13g00283 821 Gene3D Vaccinia Virus protein VP39 517 820 IPR029063 -
Accr13g00283 821 Pfam tRNA (Uracil-5-)-methyltransferase 706 756 IPR010280 GO:0006396|GO:0008173
Accr13g00283 821 MobiDBLite consensus disorder prediction 662 689 - -
Accr13g00283 821 MobiDBLite consensus disorder prediction 664 680 - -
Accr13g00283 821 MobiDBLite consensus disorder prediction 105 132 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr13g00283 tRNA_U5-meth_tr 1.9e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00283 K15332 - qsa:O6P43_028361 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00283 13 2763995 2769157 Accr13g00283 13 2763995 2769157 ECH