Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00270 ATGTCTGAACAAGGCCTCTCTCTTCCTTCCACCATCAAAACCTTCCTTCCCAACCCTACTCCTCCCAAGAAGAAGAGACATCTCCCCGGAACACCAGATCCAGATGCACAAGTGATAGCGCTATCGCCCAAGTCCTTGATGGCCACCAACCGTTTCGTGTGCGAAATCTGCAAAAAGGGGTTTCAGAGAGACCAGAATCTGCAGCTGCACCGCCGTGGGCACAACCTTCCCTGGAAGCTCCGGCAGAGGAGTGGCGGCAAAGAAGCAGCAGCCAAAAAAGTGTACGTGTGCCCTGAAAAGACGTGCGTCCACCATGATCCTTCCAGAGCCCTCGGTGACCTCTCCGGTATCAAGAAGCACTTCTGCAGAAAACACGGTGACAAGAAGTGGAACTGCCCCAAGTGCTCCAAGAAATACGCCGTTCACTCTGATTGGAAGGCTCATCTCAAGACTTGTGGCACTAGAGAGTACAAATGTCACTGTGGCACTCTTTTCTCCAGGAAAGACAGCTTCGTGACGCATAGAGCTTTCTGTGATGTCTTGGCGGAAGAAAGTTCCCGAATAAGCTTGGTCCCTGAAGCATCTAGAATCCCTCAGGTTTTTACTGCCTATTATCCCCCCGGGCCTGATTTGATGCAAACCATGAACATGCTTGCAACTTCGTCGTCTTCTTCCTCGTGGCTGAAACCATACCCAGAAGCATCATTCGAGAGTTTAGCCAATCTGGCCATGTCCGGGGTACCTCGCCTGCTAAAGGAGGAGGAAGAAGAAGAGGAGAACAAAGGAGCGTTGTCGTATAGCGCAAGCTCTTTGTATTATAGCAATTATCAAAACCCATCGTCGCTAGTAGGTTTGTCTCAGCCTCATCACATGTCATCATCATCACCTACTTCACTGTTACAAAAAGTAAACCAGATGGGATCTACGGTAGTAGGAAGCAACCATATCAACATTTTTGGCTTGATGGGTGAATCCTTACCGCTCATCTCCAACAGCTCTACCACACCGTTTAGACATGGAACTGATCATGATCATCAAAACTTGAACGACTTGGCCGTGATCTCACAAGGATTGGTATTGAATGATTTGAACTCGAGCCACTTTGTGAGAAGCGGCGAGAATTCTGATCAAATGGAATTGGGTGGTTTAACCAGAGATTTTCTAGGCGTTGGTGAAAAAGAGTTGGTCAAGTTTAGTGCAATAGGCTCCACTGCTCAGCCATGGAACTCGATCAGCCTCTGA 1242 0.4855 MSEQGLSLPSTIKTFLPNPTPPKKKRHLPGTPDPDAQVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRSGGKEAAAKKVYVCPEKTCVHHDPSRALGDLSGIKKHFCRKHGDKKWNCPKCSKKYAVHSDWKAHLKTCGTREYKCHCGTLFSRKDSFVTHRAFCDVLAEESSRISLVPEASRIPQVFTAYYPPGPDLMQTMNMLATSSSSSSWLKPYPEASFESLANLAMSGVPRLLKEEEEEEENKGALSYSASSLYYSNYQNPSSLVGLSQPHHMSSSSPTSLLQKVNQMGSTVVGSNHINIFGLMGESLPLISNSSTTPFRHGTDHDHQNLNDLAVISQGLVLNDLNSSHFVRSGENSDQMELGGLTRDFLGVGEKELVKFSAIGSTAQPWNSISL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00270 413 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Accr13g00270 413 SUPERFAMILY beta-beta-alpha zinc fingers 51 150 IPR036236 -
Accr13g00270 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Accr13g00270 413 MobiDBLite consensus disorder prediction 1 33 - -
Accr13g00270 413 FunFam protein indeterminate-domain 12-like 31 101 - -
Accr13g00270 413 Gene3D Classic Zinc Finger 87 178 - -
Accr13g00270 413 Gene3D Classic Zinc Finger 48 75 - -
Accr13g00270 413 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 394 IPR031140 -
Accr13g00270 413 SMART c2h2final6 52 74 IPR013087 -
Accr13g00270 413 SMART c2h2final6 130 150 IPR013087 -
Accr13g00270 413 SMART c2h2final6 95 125 IPR013087 -
Accr13g00270 413 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00270 Accr-Chr13 2634717 2636242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00270 16 322 IDZ Gene Family AT3G50700 50.877 9.90e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr13g00270 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00270 K25870 - tcc:18590071 385.956