Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00250 ATGCCTAGCCAGTCGTCACTGGAGAATATGTTGGCTTCTTCAAAGGCACAGAATAATCAGGAAAGAAAGCCAAGACCTCAGCCTGAACAAGCCCTGAAATGTCCAAGATGCGACTCTTCAAACACCAAATTCTGTTACTACAACAATTACAGTCTCACTCAGCCAAGATATTTCTGCAAATCTTGCAGGAGATATTGGACCAAAGGAGGAACTCTGAGAAATGTTCCAGTGGGTGGAGGCTGCAGGAAAAACAAAAGGTCCTCATCGTCTTCCTCTTCATCAAAACGAGCTCAGGATCAATCACTCATACCCAATTCCAATCCACTCATCAGTACCCTACCTCCATTATCATATGACCCCAATGACCTCACTCTTGCGCTAGCTAGACTCCAGAAACAATCTTGTGGACAATTTGGCTTTGACAACCATGATTTTTCTGTTCTGGGAAATTCTCTTGGAAACATCTCTTCCACAAACACTGGATTTCTAGATGCACTTCGTAGTGGATTCCTTGAAACACAGAGTAGTAGTAATCTTCAGAATCTGTACTATGGATATGGAAATGGGGACTTGGGAGAGGTGGACAATGGAAGTAACAGTAATAATGCTTGTGGGATTACTGGGGTTAGTGGAGAGATGATGCTTCCATTTGATCAAGAAGCGAGTACTGCAACTACTCAAGCCGTCACTGTCACTACCATGAAGCAAGAAATCTGCAATAATGGCAGAGAACAAGGTGATACTAATAAGGTTTTGTGGGGTCTTCCATGGCAGCTTAGTAACGGAGACACAAACATGGGTGAAATTGATTCAGGAAGAGCAAATTGGAACAGTCTCACGTCGTCAACTTGGCACGGGCTACTTAATAGTCCCCTAATGTAA 882 0.4331 MPSQSSLENMLASSKAQNNQERKPRPQPEQALKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRAQDQSLIPNSNPLISTLPPLSYDPNDLTLALARLQKQSCGQFGFDNHDFSVLGNSLGNISSTNTGFLDALRSGFLETQSSSNLQNLYYGYGNGDLGEVDNGSNSNNACGITGVSGEMMLPFDQEASTATTQAVTVTTMKQEICNNGREQGDTNKVLWGLPWQLSNGDTNMGEIDSGRANWNSLTSSTWHGLLNSPLM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00250 293 MobiDBLite consensus disorder prediction 77 114 - -
Accr13g00250 293 MobiDBLite consensus disorder prediction 83 114 - -
Accr13g00250 293 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Accr13g00250 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 195 IPR045174 GO:0003700|GO:0006355
Accr13g00250 293 MobiDBLite consensus disorder prediction 1 34 - -
Accr13g00250 293 Pfam Dof domain, zinc finger 30 86 IPR003851 GO:0003677|GO:0006355
Accr13g00250 293 MobiDBLite consensus disorder prediction 1 25 - -
Accr13g00250 293 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00250 Accr-Chr13 2407369 2408250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00250 30 293 C2C2-Dof Transcription Factor Family AT2G28510 42.086 1.91e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr13g00250 zf-Dof 1.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03488 1 71353247 71354730 Accr13g00250 13 2407369 2408250 CCT