Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00249 ATGGATCCTTCTAGTGCACAACACCAGCAGCAAATGCCTAGCCAGTCGTCACTGGAGAATATGTTGGCTTCTTCAAAGGCACAGAATAATCAGGAAAGAAAGCCAAGACCTCAGCCTGAACAAGCCCTGAAATGTCCAAGATGCGACTCTTCAAACACCAAATTCTGTTACTACAACAATTACAGTCTCACTCAGCCAAGATATTTCTGCAAATCTTGCAGGAGATATTGGACCAAAGGAGGAACTCTGAGAAATGTTCCAGTGGGTGGAGGCTGCAGGAAAAACAAAAGGTCCTCATCGTCTTCCTCTTCATCAAAACGAGCTCAGGATCAATCACTCATACCCAATTCCAATCCACTCATCAGTACCCTACCTCCATTATCATATGACCCCAATGACCTCACTCTTGCGCTAGCTAGACTCCAGAAACAATCTTGTGGACAATTTGGCTTTGACAACCATGATTTTTCTGTTCTGGGAAATTCTCTTGGAAACATCTCTTCCACAAACACTGGATTTCTAGATGCACTTCGTAGTGGATTCCTTGAAACACAGAGTAGTAGTAATCTTCAGAATCTGTACTATGGATATGGAAATGGGGACTTGGGAGAGGTGGACAATGGAAGTAACAGTAATAATGCTTGTGGGATTACTGGGGTTAGTGGAGAGATGATGCTTCCATTTGATCAAGAAGCGAGTACTGCAACTACTCAAGCCGTCACTGTCACTACCATGAAGCAAGAAATCTGCAATAATGGCAGAGAACAAGGTGATACTAATAAGGTTTTGTGGGGTCTTCCATGGCAGCTTAGTAACGGAGACACAAACATGGGTGAAATTGATTCAGGAAGAGCAAATTGGAACAGTCTCACGTCGTCAACTTGGCACGGGCTACTTAATAGTCCCCTAATGTAA 915 0.435 MDPSSAQHQQQMPSQSSLENMLASSKAQNNQERKPRPQPEQALKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRAQDQSLIPNSNPLISTLPPLSYDPNDLTLALARLQKQSCGQFGFDNHDFSVLGNSLGNISSTNTGFLDALRSGFLETQSSSNLQNLYYGYGNGDLGEVDNGSNSNNACGITGVSGEMMLPFDQEASTATTQAVTVTTMKQEICNNGREQGDTNKVLWGLPWQLSNGDTNMGEIDSGRANWNSLTSSTWHGLLNSPLM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00249 304 MobiDBLite consensus disorder prediction 1 36 - -
Accr13g00249 304 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Accr13g00249 304 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Accr13g00249 304 MobiDBLite consensus disorder prediction 1 45 - -
Accr13g00249 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 206 IPR045174 GO:0003700|GO:0006355
Accr13g00249 304 MobiDBLite consensus disorder prediction 94 125 - -
Accr13g00249 304 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Accr13g00249 304 MobiDBLite consensus disorder prediction 87 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00249 Accr-Chr13 2406684 2408250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00249 41 304 C2C2-Dof Transcription Factor Family AT2G28510 42.086 2.11e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr13g00249 zf-Dof 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00249 - - gmx:100799737 422.935