Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00233 ATGTTAGATCTTAATCTTAATGCGGATTCGACCGATTTGACACAGAACCGTGACTCGGTCATGTTCTTTGACAAATTTCCTGAAGCTTCGGCGAATCAAATGGAGGAATCGGGGACCTCTAATTCATCTGTCGTCAATGCCGACGGGTCCAGTAATGGAGGAGGCGATGATGAATCTTGCTCTACACGCGCTGGCGACGTAGTCACCTTCAATTTCGATATCCTAAAGGTGGACGGTGGTAACGACGTCGCAACCAGGGAGTTGTTTCCGGTGAGTGGAGCAAAAGGAGTGGATAGCGTCTCTGGGAATTGGCAAGGGCAATCTTCATCGCCCTTTCCATCAAATAAGAGCTGGATGGATCTCTCATTCAATAGTCAAGGTGTCAGCACAGAGGCAACGATAGTTCAACTTCAACAACAACCTCAGCCGCAGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGCTCCCAGTACAGAGGAGTCACCTTCTATAGGAGGACTGGAAGATGGGAATCACATATCTGGGACTGTGGGAAACAAGTCTATTTAGGCGGTTTTGACACTGCACATGCCGCTGCTAGAGCCTACGATCGAGCTGCTATTAAGTTCAGGGGAGTTGAAGCTGATATCAATTTCAATCTCAGTGATTATGAGGAGGATCTTAAACAGATGAAGAACCTTTCCAAGGAGGAGTTTGTTCATATTCTTCGTCGCCAGAGTACTGGTTTCTCTAGGGGTAGTTCAAAGTACAGGGGGGTAACACTGCATAAATGTGGACGCTGGGAAGCTCGGATGGGACAATTTCTTGGCAAAAAGGCTTACGATAAAGCAGCCATTAAGTGCAATGGAAGGGAGGCAGTAACTAACTTTGAGCCAAGTACTTATGTAGGGGAGTTGAACACTGTAGCGATCAATGAAGGTGTCAGTCACAGTCTTGACCTCAACTTAGGCATAGCAACCCCAGGCAAAGGTCCCAATGAAGGCAGGGGCAATCCTGAGCTCCAGTCTTTTCCTTACAACATGCATGCCCGAACAAGTTCAAGGATAGAGACCAACACTGACTCAGTAATTGGCGATCAAGCTATGAAAAAGCTTGTTGTAAATGGAGATCGCCCTTCTATATGGAATGGCGTATATCCAAATTTCTTTCCTAGTGAGGAAAGAGCAGAGGGAATGAGCACAGGTCCTGGGCAATGGCGAAGGCATGGCCAGCTAAGTGCTAACCAAGTTCCACGGTTCCCTACTGCAGCATCATCAGGATTCTCCATTTCATCATCCACTGCCATCTTCCCCGCCAAACCTATCAACTCACTTCCCCTCACCCTCTCCTTTTCTTCTTCATCCACCTCAGCTGCTCCCACCACTTCTCCATATTATTACCACATGAAGCACCCGCATTCACCATCTTAG 1413 0.477 MLDLNLNADSTDLTQNRDSVMFFDKFPEASANQMEESGTSNSSVVNADGSSNGGGDDESCSTRAGDVVTFNFDILKVDGGNDVATRELFPVSGAKGVDSVSGNWQGQSSSPFPSNKSWMDLSFNSQGVSTEATIVQLQQQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYVGELNTVAINEGVSHSLDLNLGIATPGKGPNEGRGNPELQSFPYNMHARTSSRIETNTDSVIGDQAMKKLVVNGDRPSIWNGVYPNFFPSEERAEGMSTGPGQWRRHGQLSANQVPRFPTAASSGFSISSSTAIFPAKPINSLPLTLSFSSSSTSAAPTTSPYYYHMKHPHSPS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00233 470 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Accr13g00233 470 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Accr13g00233 470 MobiDBLite consensus disorder prediction 98 115 - -
Accr13g00233 470 MobiDBLite consensus disorder prediction 451 470 - -
Accr13g00233 470 MobiDBLite consensus disorder prediction 31 60 - -
Accr13g00233 470 Gene3D AP2/ERF domain 249 293 IPR036955 GO:0003700|GO:0006355
Accr13g00233 470 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Accr13g00233 470 MobiDBLite consensus disorder prediction 136 159 - -
Accr13g00233 470 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Accr13g00233 470 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 116 335 - -
Accr13g00233 470 MobiDBLite consensus disorder prediction 32 58 - -
Accr13g00233 470 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Accr13g00233 470 SUPERFAMILY DNA-binding domain 249 293 IPR016177 GO:0003677
Accr13g00233 470 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Accr13g00233 470 SMART rav1_2 250 298 IPR001471 GO:0003700|GO:0006355
Accr13g00233 470 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Accr13g00233 470 CDD AP2 249 294 IPR001471 GO:0003700|GO:0006355
Accr13g00233 470 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00233 Accr-Chr13 2311682 2315128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00233 1 439 AP2-EREBP Transcription Factor Family AT5G60120 46.555 3.31e-101 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr13g00233 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00233 K09284 - qsa:O6P43_000276 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03494 1 71414940 71418594 Accr13g00233 13 2311682 2315128 CCT