Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00232 ATGTTAGATCTTAATCTTAATGCGGATTCGACCGATTTGACACAGAACCGTGACTCGGTCATGTTCTTTGACAAATTTCCTGAAGCTTCGGCGAATCAAATGGAGGAATCGGGGACCTCTAATTCATCTGTCGTCAATGCCGACGGGTCCAGTAATGGAGGAGGCGATGATGAATCTTGCTCTACACGCGCTGGCGACGTAGTCACCTTCAATTTCGATATCCTAAAGGTGGACGGTGGTAACGACGTCGCAACCAGGGAGTTGTTTCCGGTGAGTGGAGCAAAAGGAGTGGATAGCGTCTCTGGGAATTGGCAAGGGCAATCTTCATCGCCCTTTCCATCAAATAAGAGCTGGATGGATCTCTCATTCAATAGTCAAGGTGTCAGCACAGAGGCAACGATAGTTCAACTTCAACAACAACCTCAGCCGCAGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGCTCCCAGTACAGAGGAGTCACCTTCTATAGGAGGACTGGAAGATGGGAATCACATATCTGGGACTGTGGGAAACAAGTCTATTTAGGCGGTTTTGACACTGCACATGCCGCTGCTAGAGCCTACGATCGAGCTGCTATTAAGTTCAGGGGAGTTGAAGCTGATATCAATTTCAATCTCAGTGATTATGAGGAGGATCTTAAACAGATGAAGAACCTTTCCAAGGAGGAGTTTGTTCATATTCTTCGTCGCCAGAGTACTGGTTTCTCTAGGGGTAGTTCAAAGTACAGGGGGGTAACACTGCATAAATGTGGACGCTGGGAAGCTCGGATGGGACAATTTCTTGGCAAAAAGTATATATACCTTGGGCTGTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTACGATAAAGCAGCCATTAAGTGCAATGGAAGGGAGGCAGTAACTAACTTTGAGCCAAGTACTTATGTAGGGGAGTTGAACACTGTAGCGATCAATGAAGGTGTCAGTCACAGTCTTGACCTCAACTTAGGCATAGCAACCCCAGGCAAAGGTCCCAATGAAGGCAGGGGCAATCCTGAGCTCCAGTCTTTTCCTTACAACATGCATGCCCGAACAAGTTCAAGGATAGAGACCAACACTGACTCAGTAATTGGCGATCAAGCTATGAAAAAGCTTGTTGTAAATGGAGATCGCCCTTCTATATGGAATGGCGTATATCCAAATTTCTTTCCTAGTGAGGAAAGAGCAGAGGGAATGAGCACAGGTCCTGGGCAATGGCGAAGGCATGGCCAGCTAAGTGCTAACCAAGTTCCACGGTTCCCTACTGCAGCATCATCAGGATTCTCCATTTCATCATCCACTGCCATCTTCCCCGCCAAACCTATCAACTCACTTCCCCTCACCCTCTCCTTTTCTTCTTCATCCACCTCAGCTGCTCCCACCACTTCTCCATATTATTACCACATGAAGCACCCGCATTCACCATCTTAG 1458 0.4767 MLDLNLNADSTDLTQNRDSVMFFDKFPEASANQMEESGTSNSSVVNADGSSNGGGDDESCSTRAGDVVTFNFDILKVDGGNDVATRELFPVSGAKGVDSVSGNWQGQSSSPFPSNKSWMDLSFNSQGVSTEATIVQLQQQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYVGELNTVAINEGVSHSLDLNLGIATPGKGPNEGRGNPELQSFPYNMHARTSSRIETNTDSVIGDQAMKKLVVNGDRPSIWNGVYPNFFPSEERAEGMSTGPGQWRRHGQLSANQVPRFPTAASSGFSISSSTAIFPAKPINSLPLTLSFSSSSTSAAPTTSPYYYHMKHPHSPS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00232 485 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Accr13g00232 485 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Accr13g00232 485 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 MobiDBLite consensus disorder prediction 98 115 - -
Accr13g00232 485 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Accr13g00232 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 116 350 - -
Accr13g00232 485 MobiDBLite consensus disorder prediction 31 60 - -
Accr13g00232 485 MobiDBLite consensus disorder prediction 136 159 - -
Accr13g00232 485 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Accr13g00232 485 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Accr13g00232 485 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 MobiDBLite consensus disorder prediction 32 58 - -
Accr13g00232 485 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Accr13g00232 485 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Accr13g00232 485 MobiDBLite consensus disorder prediction 466 485 - -
Accr13g00232 485 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00232 Accr-Chr13 2311682 2315128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00232 73 446 AP2-EREBP Transcription Factor Family AT4G36920 51.269 1.19e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr13g00232 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00232 K09284 - qsa:O6P43_000276 608.216