Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00227 ATGGGTTGCTTTCTATGCCCTCGCGAACCAACCAACAAACCTTCTTCCCTTCATCACAATTCCAAAAGCATCATTCGCTGCGATAGGACGACGCATCATCACCATCGCCCTATTGCAGATAAGGTTAAAGCAGTCTCGAACGTGAATGTGAAGAAGGAAATTATTTCTCCCAAGTCTAATGGACTTTCTCCGGAGCTGCAGGCCTTAAATTTAGAAGGCAAAATTCCAATTGACGGAAAAGTTAATGATCTGAATCGTGCAAAATCCTTCTCCTTTGGTGAGCTCGCAGAGGCAACAGGTCATTTCAGGCCAGATTGCTTGGTGGGCGAAGGAGGCTTTGGGAAAGTTTACAAGGGATACTTGAAGAGAACCAAGCAGGTGGTGGCTATAAAGCAACTGGACCCGGATGGACATCAAGGGAAGAGGGAATTTGTGGTGGAAGTGTTGACACTGAGTATGGCAGACCACCCTAATCTGGTCAAACTCTTAGGATTCTGTGCCATGGGACAACATAGAATGCTGGTTTATGAGTACATGCCTTTGGGATCCCTCGAGAATCATCTCTATGATCTTCCAGCAGGTAGAAAAGCACTAGATTGGAACACAAGAATGAAAATAGCAGCAGGAACAGCAAGGGGTTTGGAATATTTGCATGATAAAATTAAGCCACCAGTGATATACAGGGACCTGAAATGTTCCAACATACTGTTAGGAGAGGCATATCATCCCAAGTTGTCTGATTTTGGGTTGGCAAAAGTAGGGCCAAGTGGAGAAGACACACATGTTTCAACAAGGGTTATGGGCACATATGGCTATTGTGCTCCTGAATATGCCATGACTGGTCAATTAACTTTTAAGTCCGACATTTACAGCTTCGGTGTTGTTCTTTTGGAGCTCATCACCGGCAAACAAGCTTTTGACAACTCAAGGCCTCCCAAACAACAAAACCTCGTTTCTTGGGCAAGGCCAAAGTTCAAGGACAGGAAAAGATTCTCAGAAATGGCGGATCCATCGCTTGAAGGACAATATCCAGTGAGAGGATTGTACCAAGCTCTGGCCATTGCAGCCATGTGTGTGCAAGAGAAGCCTCACATGAGACCTGCTATTGCTGACGTCGTCACTGCCCTCAACTTCCTCGCTTCCCAGAAATATGATCCACGTCATCAAATTTCACCCTCCAAGCCCAAATCCATGACAGATCATCAGCATCATCATCACGATCATACTCTTCTTGATGTTAATCTCTCTGACTCAGACGGATCTGGGACACACCTTAACAATTCTGGGACAGATCGATCTGAGAATGAGGGAAGTAATTCTGATGTGTCAGACAGATCTGCGTACGACGAAGAAAATTAA 1359 0.4511 MGCFLCPREPTNKPSSLHHNSKSIIRCDRTTHHHHRPIADKVKAVSNVNVKKEIISPKSNGLSPELQALNLEGKIPIDGKVNDLNRAKSFSFGELAEATGHFRPDCLVGEGGFGKVYKGYLKRTKQVVAIKQLDPDGHQGKREFVVEVLTLSMADHPNLVKLLGFCAMGQHRMLVYEYMPLGSLENHLYDLPAGRKALDWNTRMKIAAGTARGLEYLHDKIKPPVIYRDLKCSNILLGEAYHPKLSDFGLAKVGPSGEDTHVSTRVMGTYGYCAPEYAMTGQLTFKSDIYSFGVVLLELITGKQAFDNSRPPKQQNLVSWARPKFKDRKRFSEMADPSLEGQYPVRGLYQALAIAAMCVQEKPHMRPAIADVVTALNFLASQKYDPRHQISPSKPKSMTDHQHHHHDHTLLDVNLSDSDGSGTHLNNSGTDRSENEGSNSDVSDRSAYDEEN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00227 452 SMART serkin_6 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00227 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Accr13g00227 452 ProSiteProfiles Protein kinase domain profile. 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00227 452 MobiDBLite consensus disorder prediction 386 452 - -
Accr13g00227 452 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Accr13g00227 452 Pfam Protein kinase domain 107 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00227 452 MobiDBLite consensus disorder prediction 414 436 - -
Accr13g00227 452 MobiDBLite consensus disorder prediction 437 452 - -
Accr13g00227 452 Gene3D Transferase(Phosphotransferase) domain 1 179 400 - -
Accr13g00227 452 FunFam Serine/threonine-protein kinase PBS1 179 394 - -
Accr13g00227 452 MobiDBLite consensus disorder prediction 397 413 - -
Accr13g00227 452 FunFam serine/threonine-protein kinase PBS1-like 77 178 - -
Accr13g00227 452 Gene3D Phosphorylase Kinase; domain 1 77 178 - -
Accr13g00227 452 SUPERFAMILY Protein kinase-like (PK-like) 88 408 IPR011009 -
Accr13g00227 452 CDD STKc_IRAK 108 377 - -
Accr13g00227 452 PANTHER OS07G0668900 PROTEIN 47 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00227 Accr-Chr13 2203986 2207778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00227 78 381 Glycoside Hydrolase AT3G07070 62.171 3.03e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Accr13g00227 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00227 - - gmx:100794680 546.969