Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00199 ATGATGTCTTTCAATTCAGGCACGTATGAGGATAATTCTTGGTTTTGGGAAAGGAACAAGGCATCCTCAATAATCATAGCTGCTGCCCTCTTCCTTCTACTAACATTCTACTGCATGTGGCAGTTCTGCTTGTATGGAGGCCCTCGCGCTAGTTCCTCTAGAAACCAGCCTTCGAGGGGGGATTTCAATGAGCCTGATCCTGATCCTGATGATCATCATCATTCTATACAGATTCAAGGTCTTGGTTTAGAGTTGTGGGTCGTATCATCTCTTCCGACGTCTCAGTTTAAGAAGAATGAGGGAAGTAACAAAGAGTGTGCGATATGCTTGGCAGAGTTTAAAGAAGAAGAATGGGTTAAGAGACTGCCTAGCTGCGCTCATGTCTTTCATGTTTCTTGCATAGCCACCTGGTTTCGGTCTCGCTCGAATTGTCCTATCTGCAGATCTAATGTCAATCATCAAGATCATCTCGCTCTTAGCTTGGAGTCATCTGTTTCTAACTACGCGTCGCCTGACGAGACGTTGAGCAGAGAAGAGCTTTCGAGAGAAAGGCCTTCACAATTATGCAGTCACACTACAACACTACAACCCACCTCATGTACCAATTGA 609 0.4499 MMSFNSGTYEDNSWFWERNKASSIIIAAALFLLLTFYCMWQFCLYGGPRASSSRNQPSRGDFNEPDPDPDDHHHSIQIQGLGLELWVVSSLPTSQFKKNEGSNKECAICLAEFKEEEWVKRLPSCAHVFHVSCIATWFRSRSNCPICRSNVNHQDHLALSLESSVSNYASPDETLSREELSRERPSQLCSHTTTLQPTSCTN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00199 202 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 154 IPR044675 -
Accr13g00199 202 MobiDBLite consensus disorder prediction 175 202 - -
Accr13g00199 202 MobiDBLite consensus disorder prediction 186 202 - -
Accr13g00199 202 SUPERFAMILY RING/U-box 96 154 - -
Accr13g00199 202 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Accr13g00199 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 157 IPR013083 -
Accr13g00199 202 SMART FANCL_C_2 102 156 - -
Accr13g00199 202 Pfam Ring finger domain 104 148 IPR001841 -
Accr13g00199 202 SMART ring_2 106 147 IPR001841 -
Accr13g00199 202 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00199 Accr-Chr13 1802627 1803235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00199 71 151 C3H Transcription Factor Family AT5G10380 45.783 3.34e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00199 - - pcin:129313194 173.711