Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00196 ATGGCGATTTCAAGAATTGCTGTCGGACATCCATCGGAGTTTGGCCACGCCGGTGCTCTTAAGGCTGCTCTGGCCGAGTTCATTTCAGTGCTCATCTTTGTGTTCGCCGGAGAAGGCTCCGGCATGGCTTTCAACAAGTTGACGGACAATGGATCGTCGACGCCGGCGGGGTTAGTGTCAGCATCGTTAGCTCATGGCTTCGCATTGTTCGTGGCGGTTTCAGTCGGCGCCAACATTTCAGGAGGCCATGTGAATCCCGCTGTTACTTTTGGCGCCTTCATCGGGGGTCACATCTCTCTCATTAGAACCATTTTGTACTGGATCGCCCAATTGCTTGGCTCTGTTGTTGCTTGCTTACTCCTTAAATTCGCCACCGGCGGACTGGAAACATCTGCTTTCTCATTATCAACTGGAGTGGGTGCATGGAACGCGGTGGTGTTTGAGATAGTGATGACCTTCGGTCTAGTGTACACGGTGTATGCGACGGCTTTAGACCCAAAGAAGGGTGACATTGGGACAATTGCTCCGATCGCGATTGGGTTCATCGTCGGAGCGAACATATTGGCGGGTGGGGCCTTTGACGGAGCATCCATGAACCCGGCTGTCTCTTTCGGGCCAGCTGTCGTGAGCTGGACGTGGGCCAATCACTGGGTTTACTGGCTGGGCCCCTTCATCGGGGCAGCTATAGCTGCTGTTGTTTATGAGGTGGTATTCATGAACCAAACTCATCAACAACTTCCCGTCGCAGAATATTAA 756 0.5278 MAISRIAVGHPSEFGHAGALKAALAEFISVLIFVFAGEGSGMAFNKLTDNGSSTPAGLVSASLAHGFALFVAVSVGANISGGHVNPAVTFGAFIGGHISLIRTILYWIAQLLGSVVACLLLKFATGGLETSAFSLSTGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGDIGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWLGPFIGAAIAAVVYEVVFMNQTHQQLPVAEY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00196 251 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Accr13g00196 251 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 Pfam Major intrinsic protein 17 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr13g00196 251 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Accr13g00196 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Accr13g00196 251 SUPERFAMILY Aquaporin-like 16 245 IPR023271 -
Accr13g00196 251 FunFam Probable aquaporin TIP1-1 4 251 - -
Accr13g00196 251 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00196 Accr-Chr13 1759412 1760594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00196 1 251 Major Intrinsic Protein MIP AT2G36830 76.892 6.56e-138 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00196 K09873 - mnt:21394129 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03514 1 71618909 71619876 Accr13g00196 13 1759412 1760594 CCT