Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00185 ATGTCTGCAGCTCTGGACATGACCCTTGATGATATCATTAAGAAAAACAAGAAATCTGGATCTGGTAACTCCAGAGGTCGTGGCCGAGGATCTGGTCCCGGTCCTGCTCGCCGCTTCCCAAATCGTGCCGCCAATCGTGCAGCACCTTATACAACTGCAAAGGTACGGCAACCATTTTTTCCGGCATCGGAGGCGACATGGCAGCATGATATGTTTGCGGATCAGCCTATGGTACCGCACCCACCTCAAGGTGGTCGAGCGTCTGCCATAGAAACGGGGACTAAGCTCTACATATCTAATTTGGATTACGGTGTTTCTAACGAGGATATTAAGGAGTTGTTTTCTGAAGTTGGTGACCTAAAACGGTATGCAATCCATTACGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTCTTTTCACGACGAGTTGATGCTGTAGCTGCTGTGAAGAGATACAATGATGTTCAACTTGATGGTAAACCGATGAAGATAGAGATTGTGGGGACAAACATTGCTACCCCTGCTGCAGCTCCTGCTGCTAATGGAGCTCTTGGAAATTCAAACATAGTACCTAGAATTGGGCAAGGTAGAGGTGGGGCTTTTGGAAGGCCACGTGGTGGTGGTAGAGGACGTGGCTTTCAGAGCGGTCGAGGACGTGGAAGAGGTCGTGGAGAGAAGGTGTCCGCAGAAGATCTTGATGCTGAGTTGGAGAAGTATCATTCAGAGGCAATGGAAACAAACTGA 750 0.488 MSAALDMTLDDIIKKNKKSGSGNSRGRGRGSGPGPARRFPNRAANRAAPYTTAKVRQPFFPASEATWQHDMFADQPMVPHPPQGGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYAIHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNDVQLDGKPMKIEIVGTNIATPAAAPAANGALGNSNIVPRIGQGRGGAFGRPRGGGRGRGFQSGRGRGRGRGEKVSAEDLDAELEKYHSEAMETN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00185 249 CDD RRM_THOC4 94 168 - -
Accr13g00185 249 Coils Coil 231 249 - -
Accr13g00185 249 MobiDBLite consensus disorder prediction 1 54 - -
Accr13g00185 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 171 IPR000504 GO:0003723
Accr13g00185 249 SUPERFAMILY RNA-binding domain, RBD 76 169 IPR035979 GO:0003676
Accr13g00185 249 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 247 - -
Accr13g00185 249 MobiDBLite consensus disorder prediction 196 249 - -
Accr13g00185 249 SMART FoP_duplication_2 182 249 IPR025715 -
Accr13g00185 249 SMART rrm1_1 95 167 IPR000504 GO:0003723
Accr13g00185 249 MobiDBLite consensus disorder prediction 220 249 - -
Accr13g00185 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Accr13g00185 249 Pfam C-terminal duplication domain of Friend of PRMT1 197 244 IPR025715 -
Accr13g00185 249 Gene3D - 80 232 IPR012677 -
Accr13g00185 249 FunFam THO complex subunit 4 87 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00185 Accr-Chr13 1642059 1644531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00185 93 168 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 5.16e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00185 K12881 - qsa:O6P43_028263 283.493