Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00172 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAGTTGGCAGCCGCAACAAAATCACCAGCAATCGAATGGAACTGAAAGCACTCAGCTGCTTCCTCATACTGGAGGAGGTTGCGGTGCAGGTTCAGTCCGGCCCGGTTCAATGGCTGACCGGGCCCGGCTAGCACAGCGACCACAGCCGGAGGCAGCCCTAAAGTGTCCCCGGTGCGAATCCACCAATACCAAATTTTGCTACTTCAACAATTACAGCCTGTCTCAACCTCGTCACTTCTGCAAGACATGTCGGCGATACTGGACAAACGGCGGCGCTCTCAGGAACGTTCCAGTCGGAGGCGGATGCCGGAGAAACAAGAAAAGCAAAAGGAGCCGTTCCAAGTCTCCGTCAGCTGCCACACCCACCACCGCTGACAACAAGCAGACCCTTCCCCCCAACGCCGCCACCAGTGCAATTCCCTCCGGCGCCGCTTCCACCACCGAGCTGATCGGTCAGTTGCAGCAGCCTTCCAACTCGCCATTCAACTCGCCATTCATGGCTTCTTTACAAAACCTGGGCGGCCGTCACTGCTTAGGGAACATGGGCCTGAGCTTGCGCGACATTTTCACCCAGAATGAGCCCATGGGCTTTCAAATCGGCGGAGTAGATCATAACCAGTGGCGCTCACAGCAATTCCCTAATTTCTTGAGTGGGTTCGATTCAAATAATTCAGTTGACTCTTCTTACCACCACCAGTTTCAAAGTGAGGGCATGGCACTAGTACAAAATGGAGTGATCGGAGATTCAAGTTCTAGGGTTACAACTCATCAGCAGCCACCTGTTAAATTGGAAGGGAATGGAGCCCTAAATTTGTCGAGACCACCAATAGGTAATAATCAGTACTATTCATGGACTGATTTATCGGGTCTTGCATCTTCATCCACTGGCCATATCTTATAA 939 0.5165 MVFSSIPVYLDPPSWQPQQNHQQSNGTESTQLLPHTGGGCGAGSVRPGSMADRARLAQRPQPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTNGGALRNVPVGGGCRRNKKSKRSRSKSPSAATPTTADNKQTLPPNAATSAIPSGAASTTELIGQLQQPSNSPFNSPFMASLQNLGGRHCLGNMGLSLRDIFTQNEPMGFQIGGVDHNQWRSQQFPNFLSGFDSNNSVDSSYHHQFQSEGMALVQNGVIGDSSSRVTTHQQPPVKLEGNGALNLSRPPIGNNQYYSWTDLSGLASSSTGHIL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00172 312 MobiDBLite consensus disorder prediction 12 34 - -
Accr13g00172 312 Pfam Dof domain, zinc finger 65 120 IPR003851 GO:0003677|GO:0006355
Accr13g00172 312 MobiDBLite consensus disorder prediction 127 177 - -
Accr13g00172 312 MobiDBLite consensus disorder prediction 12 62 - -
Accr13g00172 312 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Accr13g00172 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 50 237 IPR045174 GO:0003700|GO:0006355
Accr13g00172 312 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Accr13g00172 312 MobiDBLite consensus disorder prediction 263 283 - -
Accr13g00172 312 MobiDBLite consensus disorder prediction 110 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00172 Accr-Chr13 1533714 1534869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00172 34 311 C2C2-Dof Transcription Factor Family AT3G55370 40.468 7.98e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr13g00172 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00172 - - pcin:129314695 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03529 1 71756852 71757902 Accr13g00172 13 1533714 1534869 CCT