Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00171 ATGGAGGAAGACAAAGCAGCTATAGTGCAGAGCTCGATTGACTTGATAAATGAGATAGCTGCGATCTCGGACTACAGGACCACAGTCAAGAAGCACTACTGCAATTTGGCAAGAAGGTTGAAATTGTTGATTCCAATGTTCGAAGAGATTAGGGACAGCAAAGAGGCGTCACCTGAAGAGACCTTGAAAGCTTTGATTTCCTTCCAGGGAGCTTTAGAATCGGCCAAACAACTTCTCAGATTCGGGACCGAAGGCAGCAGGATTTATATGGTCTTAGAGAGGGAGCAACTTATGAAACAATACCTTGAGGTGACAGCTCAATTAGAACAAGCCTTGAGTGGAATTTCATATGATAAACTTGACGTATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTGGCACAATTCAGAAGAGCCAAAGGAAGGGTTGATGCACCTGATGATGAATTGTACGAGGATATCTTGTCACTTTATGATAAGAGCAGTGATGCAGCAACAGATCCAGCTGTTCTAAGGAGATTAGCTGAAAAATTGCATTTGATGGGAATATCTGATCTTACACAAGAATCACTAGCCTTGCATGAGATGGTGTCAACAAGTGGTGGAGACCCGGGGGCAAGTATTGAGAAGATGTCTATGTTATTGAAAAAAATAAAAGATTATGTACAAACAGAGAATCTAGTCATGGACGATACTGAAGGTGGAAAAGGCCTTTCTTCTTGCAGTAGCAGCCATGGATCGAGTGAAAAGGGTCATCAAACCCCTAATATCCCTGATGATTTTCGATGTCCAATTTCCCTGGAATTGATGAAGGATCCTGTTATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGAAGCAGGGCATAGCACCTGTCCGAAAACACAGCAGACACTTACTAGCACTGTTCTCACACCCAACTATGTCTTAAGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATGGAGCCTCCAAAACGACCCAGCAGTTCCCGGCCTAGTAAGTCAGCATCTTCCTGCTCACCAGCTGAGCGTAGTAAGATCGAAAATCTTCTCTGTAAACTTACATCTGGTAATCCTGAAGACCAGAGATCAGCAGCAGGTGAGATCCGTCTATTAGCAAAACGCAATGCAGATAACCGTGTAGCCATTGCTGAAGCTGGTGCAATACCACTCCTTGTTGACCTCCTCTCTATACCTGACTCCCGAACTCAAGAGCACGCCGTAACAGCTCTTTTAAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCGGTTCCTGGCATAGTTCATGTGCTCAGGAAGGGGAGCATGGAAGCTCGGGAAAATGCAGCAGCCACACTCTTCAGCCTCTCAGTCGTAGATGAAAATAAGGTTACTATTGGATCCTCAGGAGCCATCCCACCACTAGTGACACTGCTGAGTGAGGGCACCCAAAGGGGTAAAAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATATACCAGGGCAACAAGGGAAAAGCAGTGAGGGCGGGTGTTGTTCCTACACTAATGCGACTACTGACAGAACCCGGTGGGGGAATGGTTGATGAAGCATTGGCCATATTGGCAATATTGGCTAGTCATCCAGAAGGGAAGATTGCAATTGGTGCTGCGGAGGCTGTACCAGTTTTGGTAGGGGTCATTGGGAATGGATCCCCAAGAAACAAAGAGAATGCAGCTGCCGTTTTGGTACACCTTTGTTCCGGAGATCAGCAATATCTAGTGCAAGCTCAAGATCTCGGGGTGATGGCTCCATTGACGGATCTTGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTGATCGAGCGAATGAGCAGGTTCCTTGAGGAGCAGGAGCAGCAGCTGGAGGAAGTTCAAACACAGACTGAAGTGCAATTTCAGAATGATGATATCCAGCCCCCTTCTATTACTAACCTTATTGATAGTTGA 2004 0.4541 MEEDKAAIVQSSIDLINEIAAISDYRTTVKKHYCNLARRLKLLIPMFEEIRDSKEASPEETLKALISFQGALESAKQLLRFGTEGSRIYMVLEREQLMKQYLEVTAQLEQALSGISYDKLDVSDEVKEQVELVLAQFRRAKGRVDAPDDELYEDILSLYDKSSDAATDPAVLRRLAEKLHLMGISDLTQESLALHEMVSTSGGDPGASIEKMSMLLKKIKDYVQTENLVMDDTEGGKGLSSCSSSHGSSEKGHQTPNIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHSTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGMEPPKRPSSSRPSKSASSCSPAERSKIENLLCKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVDLLSIPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLRKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKIAIGAAEAVPVLVGVIGNGSPRNKENAAAVLVHLCSGDQQYLVQAQDLGVMAPLTDLAQNGTDRGKRKAAQLIERMSRFLEEQEQQLEEVQTQTEVQFQNDDIQPPSITNLIDS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00171 667 MobiDBLite consensus disorder prediction 237 255 - -
Accr13g00171 667 SMART arm_5 426 466 IPR000225 GO:0005515
Accr13g00171 667 SMART arm_5 467 507 IPR000225 GO:0005515
Accr13g00171 667 SMART arm_5 591 631 IPR000225 GO:0005515
Accr13g00171 667 SMART arm_5 508 548 IPR000225 GO:0005515
Accr13g00171 667 SMART arm_5 549 589 IPR000225 GO:0005515
Accr13g00171 667 SMART arm_5 385 425 IPR000225 GO:0005515
Accr13g00171 667 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Accr13g00171 667 Coils Coil 619 653 - -
Accr13g00171 667 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Accr13g00171 667 SUPERFAMILY RING/U-box 248 334 - -
Accr13g00171 667 MobiDBLite consensus disorder prediction 335 351 - -
Accr13g00171 667 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Accr13g00171 667 MobiDBLite consensus disorder prediction 233 259 - -
Accr13g00171 667 SUPERFAMILY ARM repeat 356 641 IPR016024 -
Accr13g00171 667 CDD RING-Ubox_PUB 259 311 IPR045210 -
Accr13g00171 667 PANTHER U BOX DOMAIN-CONTAINING 30 631 - -
Accr13g00171 667 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Accr13g00171 667 Gene3D - 342 657 IPR011989 -
Accr13g00171 667 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Accr13g00171 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 331 IPR013083 -
Accr13g00171 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Accr13g00171 667 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Accr13g00171 667 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Accr13g00171 667 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Accr13g00171 667 FunFam RING-type E3 ubiquitin transferase 532 650 - -
Accr13g00171 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Accr13g00171 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Accr13g00171 667 Gene3D - 5 118 IPR036537 GO:0007166
Accr13g00171 667 MobiDBLite consensus disorder prediction 330 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00171 Accr-Chr13 1513673 1517752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00171 1 638 U-box Gene Family AT3G46510 72.457 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00171 - - pvy:116146246 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00171 13 1513673 1517752 Accr13g00171 13 1513673 1517752 ECH