Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00166 ATGGAGCTCTTGAACCCTTCTCATCCTCCTCACCATCAGCCGTCTGTGGTTACCGGAGACCCCTTCTATGGCTTCTCGCCACCCCTCACTCTGACTTCGCCCTTCGCCTTCCACGGAAGCGCCACCTCTCAGCCGCCCCATCCCATGGCAGAATGTACTGAATCCGTCTACGTTGCTGTCGGAAAGTCGGTGGACAAAGCTGCCCATTTGCTTCAATGGACTTTTGGCCGCTTTAGCAACTCAGAAATTTGCATTCTCCATGTTCATCAACCTTCCTCTATGATCCCCACTCTTTTGGGAAAATTGCCTGCAACCCAAGCAAATCCTGAAGTCGTTTCTGCTTTTAGAAGAGAGGAAAGAGAACAGACCATGAGGCTTTTGGAAAATTACCTGAGCATTTGCCGTGCAGCTAAGATTAAGGCAACCAGTGTGATAGGTGAAGCTGAGCAAGTGCACAAAGGAATTGTTGATTTAATTATCAAGCATGGTGTTAGGAAGCTTGTTATAGGAGCGGTGCCCGAGAATCGCATGAAGGTGAAAAGGAATTCCAAGAAAACAAATTATGCTGCCAAGAATGCTCCCCCATTCTGTGAGATATGGTTTATCCACAAAGGTAAACTCCTATGGACAAGGGAAGCTTCTGAAAATCCTTGTTCCTTATCTTCACAATCTCAACCTGAGGTTGCTGCCTCAGACAGATTGATAACTAAATCATTACAATATGGTGAGAACGAATTATTCCATAGATCAAATTGTGCAAGAACTGCAATCTGTACTGGAACTGGTAGTTGGTCTCAGGGTGAAATCTTAGAAACAGATGCAACTTCATTATCCAAATCATCTACTTGTACCGGTCAGTTTTCTCCCCAAAATTCTACTGAGGTCTATTTAGAGACTTCTTCTGATGTTGAGGAAGATAGACTTCTTAATCTACTTGCTGAAACCAAAATAGAAGTTGAGGCTGCAAAAGATAAGGTTTTAGTGGAGCCTTTGAAATGCAAAAGACTTGAAGCAGAAGCAATGGAGGCCATAAAGAAGGTCAATATGCTTGAATTGGCTTATACATATGAAGTAAACTTAAGAAAGGAGGCAGAGAGTGCACTGCAAGCCACAGTAGAGGAGCAACAAAAGCTCTTGGATGAGAGTGAAGAACTTGCTACTGTGCTACAGAGGACCATGAGAAATATTGCCCTTCTGGATAGTCGTGCACAGGAAGCAAACCGCAGGCATGATGAAGCTGCGGGTGAGTTATTATTAATTCAAGCATCCATCTCAACCCTGTGGCAAGAAAAGCAGCAGATCAGGAGACAAAAAATGGAAGCCCTCCGCTGGCTGGAGCGATGGAAAAGTCGGGGACATATTGGAGCTGCACACTGCCATGGGGTCATTGGATTTGCTGAAGAATTACCAGACTTAGCAGAATTTTCACTTTCAGATCTTCAAAATGCTACTTGCAATTTTTCTGAGAGCTTCAAAATTGCCCAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGCTGGGGAGAACAGTTGCTATAAGAAAGTTCCATCCACATAACACGCATGCACCGACCGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCATCCTCATCTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTAGTGTATGAGTACTTACCGAATGGGAGTCTTCAAGACCTCCTATTCCGGAAAAACACCAATTCCCCTCTGACATGGAATAGCCGGGCACGCATGATTGCTGAAATTGCCAGCGCTCTTTGCTTTTTACACACTTCGAAACCTAAAACTATTGTCCATGGTGATCTAAAGCCTGAAACGATACTTCTTGACTCTGCACTTAGTTGCAAGATATGCGAATTTGGGTCCTGCAGACTGTTGACTGAGGAGTCACTCTATCGTCCTAGCGTCAGATTCAGTGCTGAGCTAAAAAGAACTTCTACATATACAGATCCTGAGTTTGGGAGGACTGGAATACTAACACCAAAGTCTGATATCTATTCCTTTGGACTTATCATTTTGCAACTCCTCACTGGCCGGACTATTCCAGTAGGGTTAGCAAGTGAGGTACGCAAGGCAGTGTCTTGTGGAAAATTGTCATCAATTTTGGATTCTTCAGCTGGAGAATGGCCTCCAGCTGTGGCTACACAATTGGTTGAACTGGGACTGCAATGCTGTCAGCAACAAGGCAGAGATAGACCAGAGCTAACACCCACTTTGGTGAGGGGATTGGAGCAATTGCATGTTTCAGAAGACCGGCCAGTGCCATCATTTTTCTTATGTCCTATCCTTCAGGAAATAATGCATGATCCTCAGGTTGCAGCAGACGGATTCACTTACGAAGGGGACGCCATACGTGAATGGCTAGAATATCATGAGACTTCTCCCATGACTAATTTAAAATTGAATCACCTGCATCTGACGCCCAATCATGCACTTCGTCTTGCAATTCAAGACTGGCTTTGCAAATCCTGA 2496 0.4459 MELLNPSHPPHHQPSVVTGDPFYGFSPPLTLTSPFAFHGSATSQPPHPMAECTESVYVAVGKSVDKAAHLLQWTFGRFSNSEICILHVHQPSSMIPTLLGKLPATQANPEVVSAFRREEREQTMRLLENYLSICRAAKIKATSVIGEAEQVHKGIVDLIIKHGVRKLVIGAVPENRMKVKRNSKKTNYAAKNAPPFCEIWFIHKGKLLWTREASENPCSLSSQSQPEVAASDRLITKSLQYGENELFHRSNCARTAICTGTGSWSQGEILETDATSLSKSSTCTGQFSPQNSTEVYLETSSDVEEDRLLNLLAETKIEVEAAKDKVLVEPLKCKRLEAEAMEAIKKVNMLELAYTYEVNLRKEAESALQATVEEQQKLLDESEELATVLQRTMRNIALLDSRAQEANRRHDEAAGELLLIQASISTLWQEKQQIRRQKMEALRWLERWKSRGHIGAAHCHGVIGFAEELPDLAEFSLSDLQNATCNFSESFKIAQGGYGCIYKGEMLGRTVAIRKFHPHNTHAPTEFHQEVQVLGSLQHPHLLTLLGVCPEAWSLVYEYLPNGSLQDLLFRKNTNSPLTWNSRARMIAEIASALCFLHTSKPKTIVHGDLKPETILLDSALSCKICEFGSCRLLTEESLYRPSVRFSAELKRTSTYTDPEFGRTGILTPKSDIYSFGLIILQLLTGRTIPVGLASEVRKAVSCGKLSSILDSSAGEWPPAVATQLVELGLQCCQQQGRDRPELTPTLVRGLEQLHVSEDRPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLEYHETSPMTNLKLNHLHLTPNHALRLAIQDWLCKS 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00166 831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 762 831 IPR013083 -
Accr13g00166 831 Gene3D Transferase(Phosphotransferase) domain 1 560 761 - -
Accr13g00166 831 Gene3D HUPs 54 196 IPR014729 -
Accr13g00166 831 Pfam U-box domain 762 830 IPR003613 GO:0004842|GO:0016567
Accr13g00166 831 Coils Coil 333 353 - -
Accr13g00166 831 SMART Ubox_2 765 827 IPR003613 GO:0004842|GO:0016567
Accr13g00166 831 ProSiteProfiles Protein kinase domain profile. 487 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00166 831 CDD RING-Ubox_WDSUB1-like 763 817 - -
Accr13g00166 831 Coils Coil 361 416 - -
Accr13g00166 831 SUPERFAMILY Protein kinase-like (PK-like) 472 745 IPR011009 -
Accr13g00166 831 SUPERFAMILY RING/U-box 759 830 - -
Accr13g00166 831 ProSiteProfiles U-box domain profile. 761 831 IPR003613 GO:0004842|GO:0016567
Accr13g00166 831 CDD STK_N 55 205 - -
Accr13g00166 831 PANTHER OS02G0152300 PROTEIN 56 825 - -
Accr13g00166 831 Pfam Protein tyrosine and serine/threonine kinase 492 744 IPR001245 GO:0004672|GO:0006468
Accr13g00166 831 Coils Coil 305 325 - -
Accr13g00166 831 Gene3D Phosphorylase Kinase; domain 1 464 559 - -
Accr13g00166 831 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 66 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00166 Accr-Chr13 1465377 1470159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00166 54 828 U-box Gene Family AT2G45910 37.578 7.87e-176 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Accr13g00166 PK_Tyr_Ser-Thr 4.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00166 - - pcin:129312791 1405.19