Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00158 ATGGATCTTCACTTTGATGGAAGTCAAGGTTCTATAATTGGTTATAAACATGATGATGGCGCCGCCAGCTCCGATTCAAATTATTTCCCGCATCCAGCCAACGATTGGGAACTCGAAGAAAACTATTGGAAACTTCTTAATCTCACAACCGATCCGTTGTATCAACCTTATGCGGCTCCGGTCAATTTCTCCCTGCATAGTAGCGTGAAATGTGAAGAATCAGAGCGGTTAGTTTCATCCTCGACTATAAACCCTGTAGGAGGCATGTCAGATGTGGCAGCTGTGTCTCAAACTTCGCCTCCAGATCCTTCGCCGGAGGACGCTGACTTTTCAGAAACTATCAGGTACATAAGCCAAATGCTTATGGAAGAGAACTTTGAAGAGAAACCAAGCATGTTTTATGATCCTCTGAGTCTACAAGTGACGGAAAAATCATTCTACGACGTTCTCAGAAAAGATCATCCTCTTTCCCCCAATCAGCATCCCCTGGACATTCATCAGAATCTTGATAACACAGATGATAACTGTTGTGGTAGCAACAAGTCTCATGGCGCTGATACGCCCACTTTCGCTGATGCTCCATTTTCTGGTGATTATGCGTCCCAGTTAAATTTTCAACCCATCTCTGAGAAACCCTCTCAACCTCCGAGTGCTTCTACTTACATCAGCAACGGATTGTCAGATGCGGATTCCTCTTTTACTAGGATCTTGGCTCAAAATATCTTTACTGATGCAGAATCTGTTTCACAATTTAAAAGGGGATTGGAAGAAGCTAGCAAATTTCTTCCCAGAGGACTTCAACTTGTCACTGATCCGGAGAGCAACTATATGGTTCCAGAATTAATGGGAGCGGCTGAAAAGGCAGTGGGAAATACTCGGGAGAATTCACATGGATTAAAGGGTAGGAAGAATCATGAACGTGAAGCTAGTGATACAGAAGAAGGGAGAAGTAACAAGCAGTCGGCAGTTTATGTGGACGAGAGTGAGCTATCAGATATGTTTGATAAGGTGTTGCTTAGTGTTGAGAGTGTTCCATTAGGTGAGGAACACAACACATGGTCTCAGAATGGAAAAGACAAGGCCAATGAACCAAGTGAACAGCCAAATTCATCAAATGGGGCGAAGACCCGCGGCAGGAGACAAGGCAGGAAGAAGGAAACCGTGGACTTGAGGACTCTTATGGCTCTATGTGCGCAAGCTGTGTCTGCATGTGACAGCAGAAGTGCCAATGAACTACTGAAGCAGATTAGGCAGCATTCTTCCCCAATCGGTGATGCATCACAGAGGCTGGCTCATTACTTTGCCAATGGCCTTGAGGCTCGCTTGTCTGGTTGTGCTACTGGAACCCAAATATTCTCTGCCTCTCTATGCACCAAGAGGATATCTGCTTCTCAAATCTTGAGAGCTTACAAAGTTCTAATATCTGTCTGCCCCTTCAGGAGGTTTGCATATTTTTTTGCAAATAGGATGATTCTTCTCGCAGCTGAAAAGGCAGAAACTCTTCATATTGTCGATTTTGGCATTCAATATGGTTTCCAGTGGCCAATACTTATCAAGTTCCTTTCGCAAAGATCTGGTGGGCCTCCGAAGCTACGCATTACAGGGGTAGAATTGCCCCAAGCTGGGTTTCGTCCAGCAGAATTAATTGAGGAGACCGGTCGACGTCTATCTAATTATTGCAAACGTTTTAATGTTCCGTTTGAATACACAGCCATAGCATCACAAAACTGGGAAACCATCCCGTTAAAGGACTTTAAGACCGAAAGAAACGAATTTCTTGCGGTGAACTGTCTGCAGAGATTTAAGAATTTATTGGACGAGACGATTGAAGTGAAGAGTCCTAGAGATGCAGTTTTCAACTTGATCAGAAAGATGAATCCTGATATATTTGTTCAATCCATTGTGAATGGATCCTACAATGCCCCTTTCTTTGCGTCACGGTTCAAAGAGGCAATGTTCTATTTTTCTGCAATGTTTGATATGTTTGACACTGTCATACCCCGTGAAAATGAATGGAGGGTGATGCTCGAGAGAGAGTTTTTGGGTCGGAAGATCATGAATGTGGTTGCGTGCGAAGGGATCGAGAGGGTTGAGAGGCCTGAGACATACAAACACTGGCAAGTGAGGGGGACGAGGGCTGGTTTCAATCGGCTGCCACTGCCGGAGGAGCTAATGGTCAAATTCAGCGAAAAGTTGAAGGCATGGTATCACAGGGATTTTGTAATTGATGAAGACAACAACTGGATGCTGCAGGGCTGGAAGGGCCGCATCATTTGTGCTTCCACATGTTGGGTGCCTTCATGA 2304 0.4466 MDLHFDGSQGSIIGYKHDDGAASSDSNYFPHPANDWELEENYWKLLNLTTDPLYQPYAAPVNFSLHSSVKCEESERLVSSSTINPVGGMSDVAAVSQTSPPDPSPEDADFSETIRYISQMLMEENFEEKPSMFYDPLSLQVTEKSFYDVLRKDHPLSPNQHPLDIHQNLDNTDDNCCGSNKSHGADTPTFADAPFSGDYASQLNFQPISEKPSQPPSASTYISNGLSDADSSFTRILAQNIFTDAESVSQFKRGLEEASKFLPRGLQLVTDPESNYMVPELMGAAEKAVGNTRENSHGLKGRKNHEREASDTEEGRSNKQSAVYVDESELSDMFDKVLLSVESVPLGEEHNTWSQNGKDKANEPSEQPNSSNGAKTRGRRQGRKKETVDLRTLMALCAQAVSACDSRSANELLKQIRQHSSPIGDASQRLAHYFANGLEARLSGCATGTQIFSASLCTKRISASQILRAYKVLISVCPFRRFAYFFANRMILLAAEKAETLHIVDFGIQYGFQWPILIKFLSQRSGGPPKLRITGVELPQAGFRPAELIEETGRRLSNYCKRFNVPFEYTAIASQNWETIPLKDFKTERNEFLAVNCLQRFKNLLDETIEVKSPRDAVFNLIRKMNPDIFVQSIVNGSYNAPFFASRFKEAMFYFSAMFDMFDTVIPRENEWRVMLEREFLGRKIMNVVACEGIERVERPETYKHWQVRGTRAGFNRLPLPEELMVKFSEKLKAWYHRDFVIDEDNNWMLQGWKGRIICASTCWVPS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00158 767 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 323 754 IPR005202 -
Accr13g00158 767 MobiDBLite consensus disorder prediction 348 376 - -
Accr13g00158 767 MobiDBLite consensus disorder prediction 288 324 - -
Accr13g00158 767 ProSiteProfiles GRAS family profile. 381 765 IPR005202 -
Accr13g00158 767 MobiDBLite consensus disorder prediction 296 315 - -
Accr13g00158 767 MobiDBLite consensus disorder prediction 82 104 - -
Accr13g00158 767 Pfam GRAS domain family 391 764 IPR005202 -
Accr13g00158 767 MobiDBLite consensus disorder prediction 82 108 - -
Accr13g00158 767 MobiDBLite consensus disorder prediction 348 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00158 Accr-Chr13 1384759 1387062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00158 113 767 GRAS Transcription Factor Family AT1G07530 48.227 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Accr13g00158 GRAS 4.9e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00158 - - pcin:129314564 1279.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03544 1 71906598 71908967 Accr13g00158 13 1384759 1387062 CCT
Accr13g00158 13 1384759 1387062 Accr13g00158 13 1384759 1387062 ECH
Accr3g01580 3 18986289 18988061 Accr13g00158 13 1384759 1387062 ECH