Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00148 ATGAGTTTCGTCTTCCGAGGGAGTAGAGGAGATGTGGAAAGTGGATTTTCAGAATTTGTTCCCGAACGAACCATGATGCGTCTCCATCCAGCTCGGCCAGTAAATAGCAATACTCTTGCTTTTCTCGTTACAGTTATCTTGTTGTTTATGATATTGAACTCTCCCCAGATGTCTCACTTTTTGATGTGGCTTATGCTGGTTGTGTTTGTGATGGCCACAAGCCTGAGGATGTACGTAACTTGGCAACAGCTTCAAGCGCAAGCAAGGGCTCATGCCACAGCAGCTGAATTACAACTTCACGTGCCACCATCAATAGCAATTGCAACAAGAGGACGCTTGCAAGGACTCAGACTTCAGCTTGCACTTCTTGATCGTGAATTTGATGAGCTTGATAATGAGACTTTGAGGGCTCTGGAATCTGCCACTGCTCCTGGTACCACTTCAATGACTGATGAAGAGATAAATACCTTACCTGTTCACACATATAGAGTTCCTGTCCCAAGAAAGGATGGCTCAGCTGGGCCTGGGATGGCATCCTCTTCGCACGCAACTGAGGTAAAGCAAGATCATGGAGGGAGAGAGGGAAGTGTGAAGGGTTCAGAAGAAGAGCTAACGTGTAGTATTTGTTTGGAACAAGTCAAGAGAGGAGAGCTAGTCCGTAGCTTGCCATGTTTGCATCAGTTTCATATGAACTGCATCGATCCATGGCTGCGACAGCAGGCAAAATGCCCTGTCTGTAAATTCAGGATGGGGTCTGGATGGCAGGGAAATTCGGGGGACACTGACTCTGATGGTTTAGATATTGTTTAG 810 0.4654 MSFVFRGSRGDVESGFSEFVPERTMMRLHPARPVNSNTLAFLVTVILLFMILNSPQMSHFLMWLMLVVFVMATSLRMYVTWQQLQAQARAHATAAELQLHVPPSIAIATRGRLQGLRLQLALLDREFDELDNETLRALESATAPGTTSMTDEEINTLPVHTYRVPVPRKDGSAGPGMASSSHATEVKQDHGGREGSVKGSEEELTCSICLEQVKRGELVRSLPCLHQFHMNCIDPWLRQQAKCPVCKFRMGSGWQGNSGDTDSDGLDIV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00148 269 Coils Coil 113 133 - -
Accr13g00148 269 SMART ring_2 206 246 IPR001841 -
Accr13g00148 269 PANTHER TARGET OF ERK KINASE MPK-1 1 254 - -
Accr13g00148 269 Pfam Ring finger domain 205 247 IPR001841 -
Accr13g00148 269 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Accr13g00148 269 SUPERFAMILY RING/U-box 201 250 - -
Accr13g00148 269 CDD RING-H2_PA-TM-RING 205 247 - -
Accr13g00148 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 258 IPR013083 -
Accr13g00148 269 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00148 Accr-Chr13 1306861 1312032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00148 1 269 C3H Transcription Factor Family AT3G55530 65.108 2.20e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00148 K16283 - gmx:100805406 375.555