Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00147 ATGAACTCCGACGTGGCTCCTCCTCCGTCCTCCTACTGGTGCTACAGCTGCACCCGCTTTGTTCGCCTCTTAGATCGGGAAGATGTCGCCTGTCCTCACTGCCAAAGCGGCTTCGTTGAAGAGATCCACAACCAGCCTTCCTCCGATCATCACCACCTCAGCCCCTTTCCTCCTTCCATCTTCCCCGATTCAGCTCCTACTTCCTACGATTTCAGCAGACAAGGGTTCCGCCGAAGACGCCGCAACGCAGGCAACAGATCTCCCTTTAACCCTGTTATTGTTCTCCGTGGACCCGTCGACGGAGCCGCTGTCGGTGGTGACCAGGAGGAAAGCAGCTTCGAATTGTACTACGATGACGGTGACGGCTCCGGTCTCCGACCCTTGCCGCCGGCTATGTCTGAATTCTTGCTAGGGTCAGGGTTCGAACGGCTTCTGGAGCAGTTTGCCCAGATCGAAATGAATGGGTTCGGCCGTCCCGAGAACCCACCTGCTTCCAAAGTAGCCATAGAGTCGATGCCTACGGTTGTTATTGAGGAGACCCATGTGGGCTCGGATGCCCACTGTGCCGTGTGCAAGGAGGCGTTCGAACTCGGGACGGAGGCGCGTGAAATGCCCTGCAAGCACATATACCACTCGGAATGCATCCTCCCATGGCTTTCAATGCGCAATTCATGCCCTGTCTGCCGCCACGAGCTGCCGTCAGATCGAAACACTGTAGACAGCAGAATGTCGGGGCAAGTCGATGACGAGACAGTAGGATTGACGATTTGGAGGCTGCCTGGTGGGGGCTTCGCGGTTGGAAGGTTTTCCGGGGGTCGCAGAGCCGGCGAGAGTCATTTCCCTGTTGTATACACAGAAATGGACGGTGGACTGAATACAAATGGAGCTCCGAGAACAGTTCCCCGAGCAGTAAGAAGCACCAGAGTCAGAGAAAGTCGTGGCTTTGGCAGAATTGTACGCAATTTCTTGTCATTCTTCGGGAGGCGTCGGTCAAGGTCGGGCTCATCTTCGTCAACTGGTTCTGATCGCGAGTCCGTGAGTTTAAGTCGTAGCCATTCGATCTCACTATTCGGTAGGAACTCAAATAGGCGCAGCCGAACTTGGGTTATGGAAGATTGA 1119 0.5523 MNSDVAPPPSSYWCYSCTRFVRLLDREDVACPHCQSGFVEEIHNQPSSDHHHLSPFPPSIFPDSAPTSYDFSRQGFRRRRRNAGNRSPFNPVIVLRGPVDGAAVGGDQEESSFELYYDDGDGSGLRPLPPAMSEFLLGSGFERLLEQFAQIEMNGFGRPENPPASKVAIESMPTVVIEETHVGSDAHCAVCKEAFELGTEAREMPCKHIYHSECILPWLSMRNSCPVCRHELPSDRNTVDSRMSGQVDDETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNTNGAPRTVPRAVRSTRVRESRGFGRIVRNFLSFFGRRRSRSGSSSSTGSDRESVSLSRSHSISLFGRNSNRRSRTWVMED 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00147 372 Pfam Ring finger domain 187 229 IPR001841 -
Accr13g00147 372 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Accr13g00147 372 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
Accr13g00147 372 Pfam Protein of unknown function (DUF1117) 252 360 IPR010543 -
Accr13g00147 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Accr13g00147 372 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Accr13g00147 372 CDD RING-H2_RNF126-like 188 229 - -
Accr13g00147 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 233 - -
Accr13g00147 372 SMART ring_2 188 228 IPR001841 -
Accr13g00147 372 SUPERFAMILY RING/U-box 167 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00147 Accr-Chr13 1302430 1303548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00147 127 235 C3H Transcription Factor Family AT5G01980 45.872 1.06e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00147 K11982 - gmx:100792874 487.648