Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00146 ATGATGAACTCCGACGTGGCTCCTCCTCCGTCCTCCTACTGGTGCTACAGCTGCACCCGCTTTGTTCGCCTCTTAGATCGGGAAGATGTCGCCTGTCCTCACTGCCAAAGCGGCTTCGTTGAAGAGATCCACAACCAGCCTTCCTCCGATCATCACCACCTCAGCCCCTTTCCTCCTTCCATCTTCCCCGATTCAGCTCCTACTTCCTACGATTTCAGCAGACAAGGGTTCCGCCGAAGACGCCGCAACGCAGGCAACAGATCTCCCTTTAACCCTGTTATTGTTCTCCGTGGACCCGTCGACGGAGCCGCTGTCGGTGGTGACCAGGAGGAAAGCAGCTTCGAATTGTACTACGATGACGGTGACGGCTCCGGTCTCCGACCCTTGCCGCCGGCTATGTCTGAATTCTTGCTAGGGTCAGGGTTCGAACGGCTTCTGGAGCAGTTTGCCCAGATCGAAATGAATGGGTTCGGCCGTCCCGAGAACCCACCTGCTTCCAAAGTAGCCATAGAGTCGATGCCTACGGTTGTTATTGAGGAGACCCATGTGGGCTCGGATGCCCACTGTGCCGTGTGCAAGGAGGCGTTCGAACTCGGGACGGAGGCGCGTGAAATGCCCTGCAAGCACATATACCACTCGGAATGCATCCTCCCATGGCTTTCAATGCGCAATTCATGCCCTGTCTGCCGCCACGAGCTGCCGTCAGATCGAAACACTGTAGACAGCAGAATGTCGGGGCAAGTCGATGACGAGACAGTAGGATTGACGATTTGGAGGCTGCCTGGTGGGGGCTTCGCGGTTGGAAGGTTTTCCGGGGGTCGCAGAGCCGGCGAGAGTCATTTCCCTGTTGTATACACAGAAATGGACGGTGGACTGAATACAAATGGAGCTCCGAGAACAGTTCCCCGAGCAGTAAGAAGCACCAGAGTCAGAGAAAGTCGTGGCTTTGGCAGAATTGTACGCAATTTCTTGTCATTCTTCGGGAGGCGTCGGTCAAGGTCGGGCTCATCTTCGTCAACTGGTTCTGATCGCGAGTCCGTGAGTTTAAGTCGTAGCCATTCGATCTCACTATTCGGTAGGAACTCAAATAGGCGCAGCCGAACTTGGGTTATGGAAGATTGA 1122 0.5517 MMNSDVAPPPSSYWCYSCTRFVRLLDREDVACPHCQSGFVEEIHNQPSSDHHHLSPFPPSIFPDSAPTSYDFSRQGFRRRRRNAGNRSPFNPVIVLRGPVDGAAVGGDQEESSFELYYDDGDGSGLRPLPPAMSEFLLGSGFERLLEQFAQIEMNGFGRPENPPASKVAIESMPTVVIEETHVGSDAHCAVCKEAFELGTEAREMPCKHIYHSECILPWLSMRNSCPVCRHELPSDRNTVDSRMSGQVDDETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNTNGAPRTVPRAVRSTRVRESRGFGRIVRNFLSFFGRRRSRSGSSSSTGSDRESVSLSRSHSISLFGRNSNRRSRTWVMED 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00146 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Accr13g00146 373 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Accr13g00146 373 FunFam E3 ubiquitin-protein ligase RING1-like 151 236 - -
Accr13g00146 373 CDD RING-H2_RNF126-like 189 230 - -
Accr13g00146 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 234 - -
Accr13g00146 373 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Accr13g00146 373 Pfam Protein of unknown function (DUF1117) 253 361 IPR010543 -
Accr13g00146 373 SMART ring_2 189 229 IPR001841 -
Accr13g00146 373 Pfam Ring finger domain 188 230 IPR001841 -
Accr13g00146 373 SUPERFAMILY RING/U-box 168 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00146 Accr-Chr13 1302427 1303548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00146 128 236 C3H Transcription Factor Family AT5G01980 45.872 1.01e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00146 K11982 - gmx:100792874 487.648