Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00133 ATGGCGTCCCAAAATCCTTCTCAACCGGCGAAACTACGGTGGGGCGAACTAGAGGAGGATGACGGCGAGGATCTTGATTTCTTGCTTCCGCCGCGACAGGTGATAGGCCCCGATGAGAACGGCATAAAAAAGGTGATTGAGTACAAATTCAACGAAGATGGCAATAAAGTGAAGATCACCACCACCACCCGTACTCGCAAGCTTGCTAACGCTCGCCTCAGTAAGCGGGCCATTGAGAGGCGATCCTGGGCTAAGTTCGGCGATGCTGTTCACGAGGATGTTGGCAGCAGGCTCACTATGGTCTCCACCGAAGAGATCCTCCTTGAGCGACCTAGGGCTCCGGGTAGCAAACAAGAAGAACCGAAGGCTGCTGGAGACCCATTGGCTCAATTCCAAAAAGGTGCTGTTCTCATGGTTTGTAGAACTTGTGGGAAGAAGGGAGACCATTGGACTTCAAGGTGTCCATACAAGGATCTTGCCCAGCCGATGGAAGGATTCACTGATAAGCCTGCTGCATCAGAAGCTGCCACTGCGGCTTCTGGTCCAACCAAGGGAGCATATGTTCCTCCTGGTATGAGAGCAGGCGCAGAGAGAACTGCTGGATCAGATATGAGGCGAAGGAATGATGAAAATTCTGTCCGGGTCACTAATCTCTCTGAGGATACAAGGGAGGCTGACTTGCTTGAACTGTTCCGTCCTTTTGGTGCTGTGAGCAGAGTCTATGTTGCTCTTGATCAAAGGACTCAAGTGAGCAGAGGATTTGGGTTCGTTAACTTTGTGAACAGGGAAGACGCCCAGAGAGCAATTAACAAATTAAATGGATATGGTTATGACAGTCTCATCCTTAGAGTTGAATGGGCCACGCCAAGAGCGAACTAA 879 0.5051 MASQNPSQPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFNEDGNKVKITTTTRTRKLANARLSKRAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKQEEPKAAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPMEGFTDKPAASEAATAASGPTKGAYVPPGMRAGAERTAGSDMRRRNDENSVRVTNLSEDTREADLLELFRPFGAVSRVYVALDQRTQVSRGFGFVNFVNREDAQRAINKLNGYGYDSLILRVEWATPRAN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00133 292 Pfam Eukaryotic translation initiation factor 3 subunit G 33 159 IPR024675 -
Accr13g00133 292 CDD eIF3G 40 158 IPR024675 -
Accr13g00133 292 Gene3D - 167 292 IPR012677 -
Accr13g00133 292 SUPERFAMILY RNA-binding domain, RBD 199 291 IPR035979 GO:0003676
Accr13g00133 292 SMART rrm1_1 212 285 IPR000504 GO:0003723
Accr13g00133 292 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 21 288 - -
Accr13g00133 292 PIRSF Transl_init_eIF-3_RNA-bind 3 292 IPR017334 GO:0003743|GO:0005737|GO:0005852
Accr13g00133 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 278 IPR000504 GO:0003723
Accr13g00133 292 CDD RRM_eIF3G_like 212 287 IPR034240 -
Accr13g00133 292 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 11 291 IPR017334 GO:0003743|GO:0005737|GO:0005852
Accr13g00133 292 FunFam Eukaryotic translation initiation factor 3 subunit G 175 292 - -
Accr13g00133 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Accr13g00133 292 MobiDBLite consensus disorder prediction 169 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00133 Accr-Chr13 1213848 1215934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00133 1 290 Eukaryotic Initiation Factors Gene Family AT3G11400 68.224 8.98e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00133 K03248 - gmx:100776807 508.449