Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00107 ATGAGTTGGAACACGCACATGGAGGTCCACTACAACAATATCAGCTACCCATACAATACAGCAGGAAGTTTTATTGAATATTTTGAAGGTCTAACCTACGAACACGTCAATTTCATTTTTTCTGGTGCTTCACATGCTCAGGAGAGCTTGTACCCATCAACTACAAGCCTATACAAGTTTGGCCCATCTGAGCCTGAGAATGCTTCATACGATCGTTACAGTGATGGGTATGAGGTGAATAATCATGACCCACGGATGGATGAGCACAGAAGGCCTTTAGAGAACACAGCAATATTTAATGAACATGCTGCAGCAGCAAGTACAGAATGGGGTGAAGGTGTAAACACCACAGCACGAGACAATTCTGTTGAATGCCCAAGAAGACATCATAATTCCCATGACTATCAGGTCACTTGGCAAGACAATATCGATCCTGACAACATGTCCTATGAGGAATTACTTGAGTTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCTCACAAGAACAGATCTCTTTGCTTCCAGTTTCAAAGTACAAGTGTGGGTTTTTTTTACGCAAGAAATCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATACAGGAGAGGGGAAAAAAGGGTCACCTTACCTTGCAAACATGTCTATCATGCTGGGTGTGCAACACAATGGCTTAGCATCAACAAGGCTTGCCCTATATGTTACACGGAGGTTTTTGCTGATATGTCAAAACGCAAATGA 744 0.4315 MSWNTHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESLYPSTTSLYKFGPSEPENASYDRYSDGYEVNNHDPRMDEHRRPLENTAIFNEHAAAASTEWGEGVNTTARDNSVECPRRHHNSHDYQVTWQDNIDPDNMSYEELLELGEAVGTQSRGLSQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYRRGEKRVTLPCKHVYHAGCATQWLSINKACPICYTEVFADMSKRK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00107 247 ProSiteProfiles Zinc finger RING-type profile. 195 235 IPR001841 -
Accr13g00107 247 SMART ring_2 195 235 IPR001841 -
Accr13g00107 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 241 IPR013083 -
Accr13g00107 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 240 IPR033276 GO:0004842|GO:0016567|GO:0046621
Accr13g00107 247 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
Accr13g00107 247 SUPERFAMILY RING/U-box 188 243 - -
Accr13g00107 247 Pfam Ring finger domain 194 235 IPR001841 -
Accr13g00107 247 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00107 Accr-Chr13 974982 978699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00107 8 244 C3H Transcription Factor Family AT3G63530 44.033 1.88e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00107 K19045 - gmx:100793907 434.491