Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00105 ATGGGCTCAATGAACTCAAACAACTGGCTTTCTTTCCCTCTTTCCCCAACTCAGTCTTCCTTGCCACCACAACTCCAAGCCACTCAGTCCCATCAGTTTTCTCTTGGCTTAGTCAATGATTCCATCGAAAACCCATTCCAAAATCACGATTGGAATCTGATGAATACACATACACACGGGGGGAGCAACGTGAATGAAGTGCCGAAGGTAGCAGATTTTCTCGGAGTGGGCAAGTCTGAGAATCAGTCAGATCTTGCAGCCTTTAATGAAATTCATCACTCGAATGATTCGGGTTACCTATTCACAAACACCAGTCTGGTACCGCCGATGCAAACCTCTGTGGTGGCCACATCTAACTTCGAGTATCAAGAAAACAACAATGCTAACACTAACCTCCAGTCTTTGACATTGTCCATGGGTAGTGGTGGTAAGGATTCTACCTGTGAAACTAGCGGTGACAATAGTACCAATTCTGCTGTCGAAACTGCTGCCCCTCGAAGAACTTTAGATACATTCGGTCAGAGAACTTCAATCTATCGAGGTGTAACCAGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGACAATAGTTGTAGAAGGGAAGGACAATCACGAAAGGGACGACAAGGTGGGTATGACAAAGAAGAGAAAGCAGCTAGGGCCTATGATTTAGCGGCACTAAAGTACTGGGGAACATCCACAACTACCAACTTTCCAATCAGTAACTATGAGAAGGAACTGGAGGAGATGAAGCACATGACAAGACAAGAATTTGTGGCCGCCATAAGAAGGAAAAGCAGTGGGTTCTCTAGGGGTGCATCAATGTATCGCGGAGTCACAAGGCACCATCAACATGGTAGATGGCAGGCAAGGATCGGTAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAAGCTGCAGAAGCATACGACATAGCGGCGATCAAGTTCAGAGGACTAAACGCAGTGACAAACTTCGACATGAGCCGTTACGACGTGAAAGCCATACTTGAGAGCAACACTCTTCCAATCGGAGGAGGGGCTGCTAAACGACTGAAGGAAGCTCAAGCTCTGGAATGTTCCAGAAAAAGAGAGGAAATGATAGCTCTTGGGTCGACCTTCCAATATGGCAGCGGGAGCGGCGGCAGCAGCGGCTCGAGCCGGCTTCAACTACAAGCCTACCCTCTGATGCAGTTGGATCAGACGCAGCCATTGTTAAGCCTACAAAACCAGGCGGAGATATCTCAGTACTCGTCACTTCATCATCCCAGTTATATCCAAACTCAGCTCCAGTTGCACCACCAAACTGCTTCTTCGTCTAACTATAACTTTCACCAGTCGCCGAGTAATAATGCTCAGCTGTATAATAGCTATCTTCAGAACCACCCGGCTCTGCTTCAGGGTTTTATGAACATGAGTTCTTGTTCTTCTTCTGTGATGGACAACGATGGTGGAGGCTCTAGTGGGAGTTACAGTGGTGGTGGAGGAGGGTTTATGGGGATGGCTTCTAATACGACGTCAGGTGGATCCGCGGAGGAGCTGGCGCTGGTCAAGGTTGAAAACTACAACATGCCGTCTGGTGGTTATGGCGGCGGCTGGCCGTCCGAGTCCCTACAGGGATCCAATGCTGCTCTCTTTACAATGTGGAATGACTGA 1680 0.4786 MGSMNSNNWLSFPLSPTQSSLPPQLQATQSHQFSLGLVNDSIENPFQNHDWNLMNTHTHGGSNVNEVPKVADFLGVGKSENQSDLAAFNEIHHSNDSGYLFTNTSLVPPMQTSVVATSNFEYQENNNANTNLQSLTLSMGSGGKDSTCETSGDNSTNSAVETAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREEMIALGSTFQYGSGSGGSSGSSRLQLQAYPLMQLDQTQPLLSLQNQAEISQYSSLHHPSYIQTQLQLHHQTASSSNYNFHQSPSNNAQLYNSYLQNHPALLQGFMNMSSCSSSVMDNDGGGSSGSYSGGGGGFMGMASNTTSGGSAEELALVKVENYNMPSGGYGGGWPSESLQGSNAALFTMWND 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00105 559 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 PRINTS Ethylene responsive element binding protein signature 317 337 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 Gene3D AP2/ERF domain 277 337 IPR036955 GO:0003700|GO:0006355
Accr13g00105 559 Gene3D AP2/ERF domain 178 243 IPR036955 GO:0003700|GO:0006355
Accr13g00105 559 SUPERFAMILY DNA-binding domain 276 337 IPR016177 GO:0003677
Accr13g00105 559 CDD AP2 276 337 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 ProSiteProfiles AP2/ERF domain profile. 178 241 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 FunFam AP2-like ethylene-responsive transcription factor 276 337 - -
Accr13g00105 559 CDD AP2 177 243 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 ProSiteProfiles AP2/ERF domain profile. 277 335 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 FunFam AP2-like ethylene-responsive transcription factor ANT 177 243 - -
Accr13g00105 559 MobiDBLite consensus disorder prediction 141 162 - -
Accr13g00105 559 SUPERFAMILY DNA-binding domain 177 243 IPR016177 GO:0003677
Accr13g00105 559 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 432 - -
Accr13g00105 559 SMART rav1_2 277 341 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 SMART rav1_2 178 247 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 Pfam AP2 domain 278 327 IPR001471 GO:0003700|GO:0006355
Accr13g00105 559 Pfam AP2 domain 178 233 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00105 Accr-Chr13 959321 962067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00105 4 559 AP2-EREBP Transcription Factor Family AT1G51190 63.406 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr13g00105 AP2 2.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00105 K09285 - pvy:116115844 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00105 13 959321 962067 Accr13g00105 13 959321 962067 ECH