Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00101 ATGGAGTCAGATCTCGAGCACCACTCTTCAACGTTACGTGGTCATCAGCAGCAGCAGATGAATTCTGGTTTGACGCGGTATCGATCGGCGCCAAGCTCGTATTTCGCGAATATCGTAGACAAGGAATTTTACGAGGACATGTTCAATCGGTCTTCCAGCCCCGAAACGGACCGAATCTTTTCACGGTTTATGAATAACCTGGCTGACGAGTCAGAAGATGCACCAGCTCAATATCTTACATCTGCTCGACAAAATTCTGCAGTGAAGGAAGAGATGGATCAGCAGTCTCAGGTTATGCCTTCCGTGAACGATGAACCGGTGGCTCTCCACCCGCCGCCGCCGCCGCAGCAGCAAAGCAATATCAGTAATTTTGTTTCTGCTCCGCAGAATCTTTTCCAAAGCTCAGGACGTCCACCTTTGCCGAATCAGAGCCTGACTTCATCGGCTATGGACGGAGTCTATTCCACGGGAGGTCATCGATTGCCACATACGAAAACTCCTGATGCAAATAATTCCAATCTAACCAGGCACAATAGCTCACCTGCAGGATTCTTTTCCAACTTAAACATTGAAAGCTATGCTTCTATGAGGGGCAAAGGCATATTGGGAGTTGGTAATAACGCGAGCGAAGGAGCTAACTTCTCTTCTGCGATGGGGATGAAAATTCCGCCAAAATACTCAACAGGACTAATGTCATCCATAGCTGAATTTGGGAATAAAGGCGACACCGAGCAAAATCAAGACACTGAATCTTTTGCCGAAGGCCAATGTAATGAGTTTATCACAGGTTTCCCCACAGGTCCTTGGGACGACTCTTCACTTATGTCTGACAATACTGCTGGACTAAAAAGATTTAGAGACGAGGATGCTAAAACGTTTTCTGAGACTCAGAACGAGTCAGGCAGCCAGCCTCGTCCTACTCCTTTGGCTCATCACCTCAGTTTGCCAAAAACTGCAGCGGAAATGGCAGTCATTGAAAAGTTTCTGCAGTCCTCAGATTCTGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTGTGCTACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAGATCAGTGAGCGTATGAGGAAGCTACAAGATCTGGTTCCCAACATGGACAAACAAACAAACACAGCAGACATGTTGGAGCTGGCTGTAGACTACATTAAAGACCTTCAAAAGCAAGTTGAGATGCTTTCAGACAGTCACGCAAAGTGCACGTGTCCACACAAGCAGAGGCAGTAA 1254 0.4697 MESDLEHHSSTLRGHQQQQMNSGLTRYRSAPSSYFANIVDKEFYEDMFNRSSSPETDRIFSRFMNNLADESEDAPAQYLTSARQNSAVKEEMDQQSQVMPSVNDEPVALHPPPPPQQQSNISNFVSAPQNLFQSSGRPPLPNQSLTSSAMDGVYSTGGHRLPHTKTPDANNSNLTRHNSSPAGFFSNLNIESYASMRGKGILGVGNNASEGANFSSAMGMKIPPKYSTGLMSSIAEFGNKGDTEQNQDTESFAEGQCNEFITGFPTGPWDDSSLMSDNTAGLKRFRDEDAKTFSETQNESGSQPRPTPLAHHLSLPKTAAEMAVIEKFLQSSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLELAVDYIKDLQKQVEMLSDSHAKCTCPHKQRQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00101 417 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 411 - -
Accr13g00101 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 410 IPR036638 GO:0046983
Accr13g00101 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 395 IPR011598 GO:0046983
Accr13g00101 417 MobiDBLite consensus disorder prediction 119 153 - -
Accr13g00101 417 Gene3D - 346 416 IPR036638 GO:0046983
Accr13g00101 417 SMART finulus 351 401 IPR011598 GO:0046983
Accr13g00101 417 FunFam Transcription factor bHLH130 family 346 415 - -
Accr13g00101 417 MobiDBLite consensus disorder prediction 82 182 - -
Accr13g00101 417 MobiDBLite consensus disorder prediction 165 182 - -
Accr13g00101 417 MobiDBLite consensus disorder prediction 1 26 - -
Accr13g00101 417 Pfam Helix-loop-helix DNA-binding domain 350 396 IPR011598 GO:0046983
Accr13g00101 417 MobiDBLite consensus disorder prediction 12 26 - -
Accr13g00101 417 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00101 Accr-Chr13 907876 910147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00101 1 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.626 2.15e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr13g00101 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00101 - - qsa:O6P43_028130 483.796