Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00081 ATGGACTCCGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTTGATGATGACTTTTACAGCGGTGAGACAGGGGATGTTCCTTTGGATTACTACAGCGACTACGATGATGGTGCTGATGATTACGTTGACGATGGTGATGAATCTGAGATGACTCGCTCCGAGCAAAATTTCACCATCTTGAAGGATTCAGATATTCAGCAAAGACAAGAGAATGACATCACAAGAGTAGCGACCGTTCTTTTTATCTCAAGAGTTGATGCCTCCATCTTACTTCGTCACTATAATTGGAATGTCAGCGAAGTGCATGAAGCATGGTTTGCGAATGAAGAACATGTCCGAAGAACAGTTGGGTTATTGGAAAAGCCAGTTGTCCAGTTTCCTAATGCTAGGGAGCTTACCTGTGGCATCTGTTTTGAAACTTATCCTTGTTCACGGATAGAGTCTGTTGCTTGTGGCCATCCCTATTGCATCTCATGTTGGGAAGGATATATTGGCACAGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGGTCCCTCCTGTGGTGCAGCTGTTGGGCAAGATATGATTGATCGATTGGCATCTCATGAGGATAAGCAGAAGTATTATCGTTACCTTTGTAGGTCCTATGTCGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTACTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTGCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAATCTGAGAACATGAACTGGATACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGCTTCTATGCTTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGCATGATGAAGCTGAAAGAAGAAGAGAAATGGCAAAAAATTCATTGGAAAAATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCTGATCTACATCAAATGCAAACAGTCCATCTTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTAAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTAAAATGGACATATGCTTATGGGTACTATTTACCAGAGCATGACCATGCTAAAAAACAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTGCAGCAGTTTCTCAATGCTGATGGCCCATCTAAAGAGTTCAATGACTTCCGAACCAAGCTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTGTCCGATGTGGACAGTAATGGAGCTGCTTCCAGCAAAGCAATGAGCTCAAAAAATGCCGCCAGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAACCAGCCGAACAAGCAGTTCCAACAAAATGAGTGATGATAGTAATTGGCATTGTGAGCAATGTACCTATGCAAATACTATGTCTTTTAACACATGCCAAATGTGCCATCTACAGCGTCGATAA 1764 0.4422 MDSEDDMHDANDVESLDDDFYSGETGDVPLDYYSDYDDGADDYVDDGDESEMTRSEQNFTILKDSDIQQRQENDITRVATVLFISRVDASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVVQFPNARELTCGICFETYPCSRIESVACGHPYCISCWEGYIGTAINDGPGCLMLRCPGPSCGAAVGQDMIDRLASHEDKQKYYRYLCRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVTCLCSYCFCWNCTEEAHRAVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVHDEAERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHDHAKKQFFEYLQGEAESGLERLHQCAEKELQQFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKAMSSKNAASSSKGRGGRGKGTSRTSSSNKMSDDSNWHCEQCTYANTMSFNTCQMCHLQRR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00081 587 SUPERFAMILY RING/U-box 132 214 - -
Accr13g00081 587 FunFam RBR-type E3 ubiquitin transferase 130 219 - -
Accr13g00081 587 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Accr13g00081 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 218 IPR013083 -
Accr13g00081 587 ProSiteProfiles TRIAD supradomain profile. 132 345 IPR044066 -
Accr13g00081 587 SMART ibrneu5 271 341 IPR002867 GO:0008270
Accr13g00081 587 SMART ibrneu5 205 267 IPR002867 GO:0008270
Accr13g00081 587 SUPERFAMILY RING/U-box 206 274 - -
Accr13g00081 587 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Accr13g00081 587 SUPERFAMILY Ran binding protein zinc finger-like 559 586 IPR036443 -
Accr13g00081 587 MobiDBLite consensus disorder prediction 1 51 - -
Accr13g00081 587 FunFam RBR-type E3 ubiquitin transferase 268 518 - -
Accr13g00081 587 MobiDBLite consensus disorder prediction 1 21 - -
Accr13g00081 587 CDD BRcat_RBR_ANKIB1 212 276 - -
Accr13g00081 587 Gene3D - 557 587 - -
Accr13g00081 587 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 433 IPR031127 GO:0004842|GO:0016567
Accr13g00081 587 MobiDBLite consensus disorder prediction 521 561 - -
Accr13g00081 587 Pfam IBR domain, a half RING-finger domain 284 331 IPR002867 GO:0008270
Accr13g00081 587 Pfam IBR domain, a half RING-finger domain 205 267 IPR002867 GO:0008270
Accr13g00081 587 MobiDBLite consensus disorder prediction 34 49 - -
Accr13g00081 587 CDD Rcat_RBR_ARI7-like 290 344 - -
Accr13g00081 587 SUPERFAMILY RING/U-box 286 334 - -
Accr13g00081 587 Gene3D - 265 518 - -
Accr13g00081 587 Pfam Ariadne domain 354 539 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00081 Accr-Chr13 672044 679290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00081 17 586 ARIADNE family AT1G65430 68.847 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00081 K11968 - pcin:129313099 1026.54