Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00080 ATGGGAGGTTGCATATCCACGCCGGCCAAGGCATTCCTTCGCAGGAGGACTAAGGACAGTGCCAAGTCATGCACAACCAAATATGACTTCCACGCGCAGCTGCCGCCGCCGCCGCAAAAAGCCCTCAACATCCGCCCTATCAACGTCATCGAGGACCCGGTCCCCGGCAACATCTTTGAAAAGTACGAGTTCGGCAAAGAACTGGGACGCGGCGAATTCGGCGTGACTCACAGATGTATGGAGATTGAGACCGGGAAGGCGTTCGCGTGCAAGAAGATCGCCAAGACGAAGCTCCGGACGGAGATAGATATCCAAGATGTGAGGAGAGAGGTGCAGATCATGAGGCATTTGCCAAAGCATCCTAATATTGTGAGCTTTAAGGAAGCTTACGAGGACAAGGATGCTGTGTACCTCGTCATGGAGCTTTGTGAAGGAGGCGAGCTTTTTGACAGAATCGTTGCTAAAGGACATTACACAGAACGTGCAGCAGCTAATGTCATTAAGACAATTCTTGAGATTTGCAAGGTATGTCATGAGCATGGGGTGATACACAGGGATTTGAAGCCTGAAAATTTCTTATTTGGGGATGCAAATGAGTCTGCTCCCGTGAAGGCAATTGATTTTGGGCTATCCACTTTCTATGAATCAGGGCAGAGGTTTAATGAAATTGTTGGAAGTCCCTATTACATGGCTCCGGAGGTATTGAGACGTAACTATGGACCAGAAATTGATGTGTGGAGCGCTGGCGTGATCCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAGTCTGAGGAAGGGATAGCGCAGGCGATCATCCGGGGAAACATTGATTTTGAAAGAGATCCTTGGCCTAAGGTTTCAGAAGAAGCAAAAAGCCTAGTTAAGAACATGCTTGATCCAAATCCGTACAGCCGATTAACTAGTCAAGAAGTTCTTGAACATCCGTGGATACAGAAGAGAGACCAGGGTCCAGATGTTTATCTAGGAGACCATGTACGAATGAGAATCAAGCAATTTTCCTTGATGAACAAGTTCAAGAAGAAAGTTCTTAGAGTGGTGGCAGATAGCCTTCCAATGGAGCAAATAGATCGTATCAAGCAGATGTTCCATATGATGGACAAGGATAAAAATGGAAACTTGTCGTTTGAAGAGCTCAAAGATGGTCTTTCTAGAATTGGACACCCGCTTCCTGATGCTGATGTGCAGGTGTTATTGGACGCAGCAGATACGGATGGAAATGGCACATTGAATTGTGAAGAGTTCATCACGATGAATGTTCATCTGGGGAAGATAGGAAGTGACGAGCATCTCTCTGAAGCTTTTTGTTATTTCGACAAGAATAAGAGTGGATTTGTGGAATTTGATGAATTGAGAGATGTCCTGTTGGATGATTTCTCTGGTCCCTGTAACGATCAGGTGGTCCATGACATCCTATTTGAAGTCGACTTGGATAAGGATGGTCGAATCTGTTTTGAGGAGTTCAAGGCGATGATGAAGACAGGACCAGATTGGAAAATGGCTTCTCGCCAATATTCAAGAGCAATGCTAAATGCGTTGAGCTTCAAAATGTTCAATAACAAATCTGTGAAATGCGCCTTGGTTTCATGA 1617 0.4545 MGGCISTPAKAFLRRRTKDSAKSCTTKYDFHAQLPPPPQKALNIRPINVIEDPVPGNIFEKYEFGKELGRGEFGVTHRCMEIETGKAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPKHPNIVSFKEAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVIKTILEICKVCHEHGVIHRDLKPENFLFGDANESAPVKAIDFGLSTFYESGQRFNEIVGSPYYMAPEVLRRNYGPEIDVWSAGVILYILLCGVPPFWAESEEGIAQAIIRGNIDFERDPWPKVSEEAKSLVKNMLDPNPYSRLTSQEVLEHPWIQKRDQGPDVYLGDHVRMRIKQFSLMNKFKKKVLRVVADSLPMEQIDRIKQMFHMMDKDKNGNLSFEELKDGLSRIGHPLPDADVQVLLDAADTDGNGTLNCEEFITMNVHLGKIGSDEHLSEAFCYFDKNKSGFVEFDELRDVLLDDFSGPCNDQVVHDILFEVDLDKDGRICFEEFKAMMKTGPDWKMASRQYSRAMLNALSFKMFNNKSVKCALVS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00080 538 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Accr13g00080 538 SMART serkin_6 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00080 538 FunFam calcium-dependent protein kinase 13 148 328 - -
Accr13g00080 538 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Accr13g00080 538 SMART efh_1 476 504 IPR002048 GO:0005509
Accr13g00080 538 SMART efh_1 367 395 IPR002048 GO:0005509
Accr13g00080 538 SMART efh_1 403 431 IPR002048 GO:0005509
Accr13g00080 538 SMART efh_1 439 467 IPR002048 GO:0005509
Accr13g00080 538 Pfam EF-hand domain pair 438 502 IPR002048 GO:0005509
Accr13g00080 538 FunFam Calcium-dependent protein kinase 7 329 505 - -
Accr13g00080 538 CDD STKc_CAMK 61 319 - -
Accr13g00080 538 Gene3D Transferase(Phosphotransferase) domain 1 148 328 - -
Accr13g00080 538 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
Accr13g00080 538 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Accr13g00080 538 ProSiteProfiles Protein kinase domain profile. 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00080 538 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Accr13g00080 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Accr13g00080 538 Pfam EF-hand domain pair 380 427 IPR002048 GO:0005509
Accr13g00080 538 Gene3D - 329 503 - -
Accr13g00080 538 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Accr13g00080 538 Gene3D Phosphorylase Kinase; domain 1 64 147 - -
Accr13g00080 538 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Accr13g00080 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 57 494 - -
Accr13g00080 538 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Accr13g00080 538 FunFam Calcium-dependent protein kinase 1 64 147 - -
Accr13g00080 538 Pfam Protein kinase domain 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00080 538 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Accr13g00080 538 SUPERFAMILY Protein kinase-like (PK-like) 49 341 IPR011009 -
Accr13g00080 538 SUPERFAMILY EF-hand 349 515 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00080 Accr-Chr13 668293 670611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00080 1 527 EF-hand Containing Proteins AT2G31500 68.657 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Accr13g00080 Pkinase 2.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00080 K13412 - qsa:O6P43_000088 829.32