LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr13g00066	ATGGGATTCTCAGTAAGACATTTCTTGATCTGCTTCTTGAATGTGAACCCATGGCAACCTCGGATTTTCTTTGCCATTTCAGTTTTTTTGTCGTGTTCATGCTGGTCTGTTTCTGGTCTGGGTTCCATGTCTTCCATTGCCATCTCTTACGGGGAAAAAGGTTCTGTCTTTTGTGGTCTGAGATCAGATGGGTCTCATACTGTGAACTGTTACGGATCAAACTCAGCCATAGTCTATGGAATACCAACCCATTTCCCAATTCTGGGTCTAACCGCAGGTGATGGCTTTGTCTGTGGACTCCTAATGGATACTTTCCAACCTTATTGTTGGGGTAGCAGTGGCTATATCGAAATGGGTGTTCCTCAACCTATGACGGAAGGAGCAGAGTATCTAGAAATCAGTGCTGGGGATTACCATGTTTGTGGATTGAGGAAGCCCTTGACAGGAAGACAGAGAAATATTTCTCTTGTAGATTGTTGGGGTTACAACATGACCCAGAACTATGTTTTTGATGGTCAGATTCAATCTATCTCGGCAGGTTCTGAATTCAACTGTGGATTATTTTCCCAGAACAGAACAGTCTTCTGCTGGGGCGACGATACTAGTAGCAGAGTAATCGGTTTAGTTCCAAAAGACAAGAAGTTCCAGAAGATTTCTGCAGGCGGCTTTCATGTGTGTGGGATTTTAGAAGGGGTGAATTCCAGAACTATTTGTTGGGGAAGGAGTTTGGGAATTGAGGAAGAAATTGCAGTGAAAAGTTCTGGGCAAGGCAATGTTGATTTAGCTCCAAATGAACCTATGCTCTCTGTTGTGGGAGGAAGATTCCATGCTTGTGGCATCAAAACTTATGATCATGGTGTGATTTGCTGGGGTTTTACTATCAAGGGAAGTTCCCCACTTCCTAGTGGGATTAAGGTATTCGAGATTGCTGCTGGAAATTATTTTACTTGTGGAATACTTGCCCAGAAATCTCTTCTTCCTTCTTGTTGGGGTGTTGGATTCCCTACTTCTCTACCATTAGCTGCCTCTCCTGGAATATGCCAGCCCAATCCATGTCCTCCTGGTTTCTATGAAGTTCAACAGCAAAAGGGTCTTTGCAAGTCCTCGGATTCTCGCTTTTGCATGCCATGTAGTGGAGCTTGTCCTGCTGACATGTATCAGAAAAATTCCAATGCTAACACGGGAAAGAAAGTTGAGAAATTTTGGTCCTTGCAGTTGCCAGTGATAATTGCTGAGATTGCTTTTGCGGTCTTCTTTGTTAGTCTTGTGACCTTAACTTCTGTTTTATATGTTCGCTACAAGCTACGAAGTTGTAGGTGTTCTATGGAAGGATCAAACGTGAAGAAACTTCATGGCAATAACTCTTCCCTCCAAAAAGAGAACAGCAAGATCAGTCCAGACTTAGAGGAGCTCAAGATCAGGAGGGCTCAAACTTTTACCTATGAGGAACTTGAAAGAGCAACAGGTGGGTTCAAAGAAGAATCCATAGTTGGCAAAGGAAGCTTTTCGTGTGTATTCAAAGGAGTATTGAAAGATGGGACTGTTGTAGCAGTGAAAAGGGCCATAATGTCTCCCAACATGCAAAAGAATTCCAAAGAGTTTCATACAGAACTTGACTTACTTTCCAGGCTGAACCATGCCCATTTACTCAACCTGCTAGGGTACTGTGAAGAAGGTGGAGAGAGGCTTCTTGTTTATGAGTTCATGGCACATGGCTCCTTGCACCAACATCTCCATGGCAAAAACAAGGCCTCCAAAGAGCAGTTGGATTGGGTTAGAAGGGTAACAATTGCAGTACAAGCAGCCAGAGGAATTGAATATTTACATGGTTATGCCTGCCCACCTGTGATTCACAGAGACATCAAATCTTCAAACATCCTCATTGATGAAGAACACAATGCTAGAGTTTCTGATTTTGGCCTCTCATTACTGGGTCCTGCTGATAGTAGCTCCCCATTGGCTGAACTACCTGCCGGGACGCTTGGCTATCTTGATCCTGAATATTACAGACTTCATTACCTTACCACAAAATCTGATGTATATAGCTTTGGCGTGCTGCTCTTGGAAATTCTGAGTGGTAGAAAAGCCATTGACATGCAATACGAAGAAGGTAACATAGTTGAATGGGCCGTGCCTTTGATTAAGGCAGGAGATATCACTGCAATTTTAGACCCAGTTCTGAAACCTCCTTCTGATCTTGAAGCCTTGAAGAGAATTGCGAACGTGGCCTGTAAATGCGTGAGGATGAGAGGGAAAGAGAGGCCATCAATGGACAAAGTGACAACTGCTTTGGAACGGGCTCTTGCGCAACTAATGGGTAGCCCAAGCAACGAGCAGCCAATTTTGCCGACGGAGGTGGTGTTGGGAAGTAACAGATTACATAAGAAATCGTCTCAGAGATCTTCAAACAAGTCAACTTCAGAAACAGACGCAGGAGAAGCTGAGGATCAAGGGTTCGAGTTCAGAGCACCGTCGTGGATAACATTTCCGAGCGTTACTTCTTCTCAAAGAAGGAAGTCGTCGGTGTCAGAGGGGGATGTGGAGGGGAAAAATTCAGAAGCCAAGAACTTGGGAAACATGGGTGTTGGTGGTGGTGATGTTTTGAGGAGTCTAGAGGAAGAGATTGGACCTGCTTCTCCTCAAGAGAGACTGTTTTTGGAGCACAACTTCTGA	2673	0.4418	MGFSVRHFLICFLNVNPWQPRIFFAISVFLSCSCWSVSGLGSMSSIAISYGEKGSVFCGLRSDGSHTVNCYGSNSAIVYGIPTHFPILGLTAGDGFVCGLLMDTFQPYCWGSSGYIEMGVPQPMTEGAEYLEISAGDYHVCGLRKPLTGRQRNISLVDCWGYNMTQNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDDTSSRVIGLVPKDKKFQKISAGGFHVCGILEGVNSRTICWGRSLGIEEEIAVKSSGQGNVDLAPNEPMLSVVGGRFHACGIKTYDHGVICWGFTIKGSSPLPSGIKVFEIAAGNYFTCGILAQKSLLPSCWGVGFPTSLPLAASPGICQPNPCPPGFYEVQQQKGLCKSSDSRFCMPCSGACPADMYQKNSNANTGKKVEKFWSLQLPVIIAEIAFAVFFVSLVTLTSVLYVRYKLRSCRCSMEGSNVKKLHGNNSSLQKENSKISPDLEELKIRRAQTFTYEELERATGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNKASKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKAGDITAILDPVLKPPSDLEALKRIANVACKCVRMRGKERPSMDKVTTALERALAQLMGSPSNEQPILPTEVVLGSNRLHKKSSQRSSNKSTSETDAGEAEDQGFEFRAPSWITFPSVTSSQRRKSSVSEGDVEGKNSEAKNLGNMGVGGGDVLRSLEEEIGPASPQERLFLEHNF	890

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr13g00066	890	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	32	-	-
	Accr13g00066	890	FunFam	Receptor protein kinase CRINKLY4	569	771	-	-
	Accr13g00066	890	SUPERFAMILY	RCC1/BLIP-II	40	242	IPR009091	-
	Accr13g00066	890	Gene3D	Transferase(Phosphotransferase) domain 1	569	779	-	-
	Accr13g00066	890	SUPERFAMILY	RCC1/BLIP-II	254	334	IPR009091	-
	Accr13g00066	890	FunFam	serine/threonine-protein kinase-like protein CCR1	461	568	-	-
	Accr13g00066	890	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	25	890	-	-
	Accr13g00066	890	CDD	STKc_IRAK	497	766	-	-
	Accr13g00066	890	MobiDBLite	consensus disorder prediction	791	808	-	-
	Accr13g00066	890	ProSitePatterns	Protein kinases ATP-binding region signature.	497	519	IPR017441	GO:0005524
	Accr13g00066	890	Gene3D	Phosphorylase Kinase; domain 1	461	568	-	-
	Accr13g00066	890	Gene3D	-	86	350	IPR009091	-
	Accr13g00066	890	Pfam	Protein tyrosine and serine/threonine kinase	494	763	IPR001245	GO:0004672\|GO:0006468
	Accr13g00066	890	ProSiteProfiles	Protein kinase domain profile.	491	768	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g00066	890	MobiDBLite	consensus disorder prediction	790	865	-	-
	Accr13g00066	890	SUPERFAMILY	Protein kinase-like (PK-like)	470	764	IPR011009	-
	Accr13g00066	890	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	616	628	IPR008271	GO:0004672\|GO:0006468
	Accr13g00066	890	FunFam	Serine/threonine-protein kinase-like protein CR4	39	206	-	-
	Accr13g00066	890	SMART	serkin_6	491	768	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr13g00066	Accr-Chr13	613795	616557	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr13g00066	26	890	Receptor kinase-like Gene Family	AT3G59420	68.036	0.0	1251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Accr13g00066		PK_Tyr_Ser-Thr	2e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr13g00066	-		-	qsa:O6P43_028109	1478.38