Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00039 ATGGAACATCCTTCTTCTCATAAGGGAAAAGACGGTGAATGCTGGAATTCTCCTCGAGCCCAGTTGGAGGGACCGGCAGCAATAGATGGTGGCACAAAAAATTCATTTTCAGAGGATATGCTTAGCACCTTGTCTGAGCTCTTAAATTTTGATACTTATGCTGGTTGGTGCAATAGCCCATCAACCACTGATCGGGTTTTAGCTAATGGGCTTTCAACATCTGCCTCGGTGCCATATGCATCACCTGATGGATTCAATTTATTGGAGGAGAGCTGTGGGTCATTCTTGGCAAGTGATGTTAATAACAATTACAATGTGATAAGAAGTTCCCCCACCTCTGGAGAGAAAGTTGCATTTCATCAAATGGAGGCCCAACTTGAGTTGTCAGACGATGGAAATGATGCTGGGAACTTAAACTATAAATGTCATCGTAGTGAATCTTTTGAAGAACTTGGTAACTTAGCGATGGGCGATCATATAGTTTCTAGGTCACCTGGCTGGTCACTAGATGAGAGAATGCTGTGGGCTTTGTCCCTTTTCAAGGAATCTGCCGGTGGTGGAATCTTGGCACAAGTTTGGGTACCAATAAAGCATGGAGATGAATTCATCTTAACGACAAGTGAGCAACCCTATTTGCTGGACCAAATGCTTGCAGGTTACCGTGAAGTGTCAAGGGCATTTACATTCTCAGCAGAAGGAAGGCCGGGCTCTGTTTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGTTCCTGAGTGGACGTCCAATGTTGGTTACTACACCAAGGCTGAATATTTGAGGATCGAGCATGCAATTAATCACAAGGTTCGTGGATCAATTGCAGTTCCAGTGTTTGATCTTTATTCTGAAATGCCATGCCATGCTGTACTGGAACTAGCCACTATAAAGGAAAAGACTGATTTTGATAGGGAACTGGAAATTCTTTGCCAAGCACTCCAGGTTGTGAATTTAAGGACTACTGTGACTCCCCGACTTCTTCCCCAGAGTCTCTCAAATAAGAAAAGAGCAGCTTTAATGGAGATAATAGATGTGTTACGGGCTGTGTGTCATGCACATAGTTTGCCTTTGGCATTGACATGGATTCCCTGTTGTTACTTGAAGGGAATCGGTAATGAAAGTATGAGAGTACTAATTAAGGAGGGTCATTCAAGTTCTAGTGGTAAATATGTATTATGCATTGAAGAATCGGCTTGCTATGTTAATGATAGAAAGATGGAAGGGTTTGTTCGTGCATGTGTTGAACATCATCTTGAGGAAGGGCAAGGTACAGCTGGCAAAGCTATTCGGTCAAATCAGCCATTCTTCTATCCTGATGTCAAGGCATATGATGTTGGTGAATATCCACTTGTTCAACATGCTCGAAAATACAACTTGAACACTGCGGTTGCTATCAGGCTACGGAGTACCTTCACTAATGATGATGATTACATTTTAGAATTTTTTCTACCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTGGACAACCTCTCACGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACAGTTACTGATGCCGAATTATCAGGGATATCAGGGTCACTGGTAAACCAAAATGAAAAAGTACGGGATTTTTCGCCTATATCCAGGAAAAACTCCCAAATGGAATTGATGGATGGTGGGAAGGACTCAGTCAGTAAGATTTCATTTAAGGCTTGCAACTTGAGAAACAATGGAATTGAAGCTGCTTATAACCAGGAAATGAATGTGTCAAAAAGGCACGTGGAAAAAAAGAGAAGCATGGGTGAGAAGAATGTCAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTAAAGGATGCCGCAAAGAGCATTGGTGTTTGTCCTACAACTCTGAAACGAATATGCAGACAACATGGCATTTCAAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAAAAAATCCAGACTGTGCTTGATTCTGTTCAGGGAGTGGAAGGAGGGCTAAAGTTCAACCCTTCTTCTGGGGGGTTTGTGGCAGGAGGTTCAATCATTCAAGAATTTGATGTGCATGGTCGTCTTTTGTTCCCTGAGAAGAGTACGCCCATACAAGATCCTGAGTCCGTTGCAAAATATACAGTCTCGGTGCCTACTGTACCTTGTAGTGAGGGAGAGAATTCAGCAATCAAGTTGGAAGATAATGATGTTTATATGGCTGATAACCAACTTGCGTCACAAGGTGTAGTTATCCGAAATTCTTGCGAGGGAGAACTGAAGAAGGCCAAAGCTTCTTTTGTTGATTGTAGTCAAGATTCAAAATCAATGGCCTTAGATGATGGATCATGCCCGATGGTCAAGGCTCAGGGATGTCCCGAGCAAGCATGTCTCGGCCCAGTTGCTACAGAAGATGGAAACGCATGGGGTCTGAACAAGGATTGTCAGGGAGCGAAAAATCCTGTTCCCGATATTGTCTCTTGGAGTTCAAGCTCTCTGGTTGCTGACGATATGGAAAATATTGTGGATGGGGACAATGGGATTGTTGAACACAGCCAACCTACATCTTCAAACGTGACAGACTCGTCCAATGGCTCTGGTTCAATGGTCCATGGCAGTTCGTCTGGTGCTCAAAGCCTTGAGAATAAGAAGCATTCCAAAGTCAAAGTAACGCTTGCTGACCGTGGATCAAAAATTATTGTGAAAGCCACCTATAAAGACGATACTGTACGCTTCAAGTTTGATCCATCTGCAGGTTGTTTCCAACTATACGAAGAAGTGGCCACAAGATTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTTGATGATGAAGAGGAGTGGGTGATGTTGGTAAATGACTCAGATTTGCAAGAGTGCGTAGAAATATTGGAAGATATGGGCATAACTAGTGTGAAGTTTCTTGTTCGTGATATACCTTGCTTCTTGAGCAGCTCTGGTAGCAGCAGTTGTTTCTTGGAAGGCTCCTAG 2994 0.4265 MEHPSSHKGKDGECWNSPRAQLEGPAAIDGGTKNSFSEDMLSTLSELLNFDTYAGWCNSPSTTDRVLANGLSTSASVPYASPDGFNLLEESCGSFLASDVNNNYNVIRSSPTSGEKVAFHQMEAQLELSDDGNDAGNLNYKCHRSESFEELGNLAMGDHIVSRSPGWSLDERMLWALSLFKESAGGGILAQVWVPIKHGDEFILTTSEQPYLLDQMLAGYREVSRAFTFSAEGRPGSVLGLPGRVFISKVPEWTSNVGYYTKAEYLRIEHAINHKVRGSIAVPVFDLYSEMPCHAVLELATIKEKTDFDRELEILCQALQVVNLRTTVTPRLLPQSLSNKKRAALMEIIDVLRAVCHAHSLPLALTWIPCCYLKGIGNESMRVLIKEGHSSSSGKYVLCIEESACYVNDRKMEGFVRACVEHHLEEGQGTAGKAIRSNQPFFYPDVKAYDVGEYPLVQHARKYNLNTAVAIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSRTMQRICKSLRTVTDAELSGISGSLVNQNEKVRDFSPISRKNSQMELMDGGKDSVSKISFKACNLRNNGIEAAYNQEMNVSKRHVEKKRSMGEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFNPSSGGFVAGGSIIQEFDVHGRLLFPEKSTPIQDPESVAKYTVSVPTVPCSEGENSAIKLEDNDVYMADNQLASQGVVIRNSCEGELKKAKASFVDCSQDSKSMALDDGSCPMVKAQGCPEQACLGPVATEDGNAWGLNKDCQGAKNPVPDIVSWSSSSLVADDMENIVDGDNGIVEHSQPTSSNVTDSSNGSGSMVHGSSSGAQSLENKKHSKVKVTLADRGSKIIVKATYKDDTVRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECVEILEDMGITSVKFLVRDIPCFLSSSGSSSCFLEGS 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00039 997 Pfam RWP-RK domain 602 650 IPR003035 -
Accr13g00039 997 CDD PB1_NLP 899 979 IPR034891 -
Accr13g00039 997 MobiDBLite consensus disorder prediction 844 883 - -
Accr13g00039 997 ProSiteProfiles RWP-RK domain profile. 583 670 IPR003035 -
Accr13g00039 997 MobiDBLite consensus disorder prediction 1 34 - -
Accr13g00039 997 Gene3D - 895 978 - -
Accr13g00039 997 ProSiteProfiles PB1 domain profile. 898 980 IPR000270 GO:0005515
Accr13g00039 997 SMART PB1_new 898 980 IPR000270 GO:0005515
Accr13g00039 997 Pfam PB1 domain 901 978 IPR000270 GO:0005515
Accr13g00039 997 PANTHER PROTEIN NLP8 143 991 IPR045012 GO:0003700
Accr13g00039 997 MobiDBLite consensus disorder prediction 849 881 - -
Accr13g00039 997 SUPERFAMILY CAD & PB1 domains 895 982 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00039 Accr-Chr13 408285 413492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00039 1 994 NLP Transcription Factor Family AT2G43500 47.264 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Accr13g00039 PB1 9.7e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00039 - - aprc:113864503 1270.76