Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00023 ATGACGGCCAGCTCCTTCTGCAATGCTGACTCTGTGTTCTCGAGAGAAGAAGGCGTAGATATTAGAAAGATGATGGAACCAAAGAGAAGCCTCTGCTCTGTGGATCAAAGCAATTATTCCTCTATGGCATCTAAAAGACACAAGGCTGATTTATCCATCTCCACAAAGGAGAGGAAGGAGAAGATTGGGGAACGGATTGTTGCCTTGCAGCAGCTCGTTTCTCCATTTGGCAAGTCAGATACAGCTTCGGTCCTTTTAGAGGCAACTCACTATATAAGGTTCCTTCATAAACAAGTTAAGGTGCTTAGTGCTCCTTATTTGCAATGCTCTCCCACAACCAAAACGCAGGATTTAGAGGAGTGGAGCCTGAGGAGTAGAGGATTATGTCTGGTTCCTGTATCGTATACGATTGGAGTTGCTCAGAGCAATGGTGCAGATATATGGGCCCCCACCAAAAGCACATCGTCACAATTTGACTAG 480 0.4542 MTASSFCNADSVFSREEGVDIRKMMEPKRSLCSVDQSNYSSMASKRHKADLSISTKERKEKIGERIVALQQLVSPFGKSDTASVLLEATHYIRFLHKQVKVLSAPYLQCSPTTKTQDLEEWSLRSRGLCLVPVSYTIGVAQSNGADIWAPTKSTSSQFD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00023 159 FunFam Transcription factor bHLH113 family 45 121 - -
Accr13g00023 159 SMART finulus 52 101 IPR011598 GO:0046983
Accr13g00023 159 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Accr13g00023 159 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 136 - -
Accr13g00023 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 110 IPR036638 GO:0046983
Accr13g00023 159 Gene3D - 42 117 IPR036638 GO:0046983
Accr13g00023 159 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00023 Accr-Chr13 292520 295638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00023 24 156 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 62.687 5.14e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00023 - - pcin:129312787 290.041