Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00020 ATGAACCCCTGCTTGATGGATTTGGCCCTGGATTTCCTGGTTCCGTCTTTGTGGGAGATCAAAGTTACAGTGGCCACCTCCATGTTTGTGATAATCGCCTATTGGTTTTTCACATACAGAACTGGAGACTTTGATGTTGGTCGAGTACCTGTTGACAATTCCGGGGATGCTTCTGACGACAAAGACAAGATGCTCCAGTTTAAAGGAGATCCTCAGACCAATTCGGCATATCTGATTAAGTTGGAACTTTTGGCTGCTAAGAATCTTATTGGTGCAAATTTAAATGGCACGTCAGATCCTTATGCTATCATTACATGTGGCAATGAGAAGCGATTCAGCTCCATGGTTCCTGGTTCAAGAAATCCTATGTGGGGTGAGGAATTCAATTTCTCTGTTGATGAACTTCCTGTCCAGATTAATGTTACGATATATGATTGGGATATTATTTGGAAAAGTGCTGTTCTAGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTATGGTATACATTAGATAGCCCATCGGGGCAGGTTTGCCTTCACATAAAAACAAGAAAACTGCCTGCAAATTCTTCCAGGATCAATGGCTATGGCGGACCCAACACTCGAAGAAGGATGCCCACAGAAAAGCAAGGGCCAACTGTTGTTCATCAAAAGCCAGGGCCACTTCAGACAATATTTAATCTTCTTCCAGATGAGGTTGTTGAGCATAGTTACTCTTGTGCACTTGAAAGGTCATTTTTGTATCATGGTCGTATGTATGTCTCAGCATGGCATATTTGCTTCCATTCTAATGTGTTCTCAAAGCAAATGAAGGTGGTTATTCCATTTGAGGATATAGATGAGATTCGAAGGAGTCAGCATGCATTTATTAATCCTTCAATAACAATTATTCTTCGCATGGGTGCGGGTGGACATGGTGTACCTCCTTTGGGAAGTCCTGATGGTAGAGTAAGATATAAATTTGCGTCATTTTGGAATAGAAATCATACATTTAGAAATTTACACCGTGCAGCAAAGATTTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAATTGCGTGCTCAGAGCAGTTCTGTTAGGGGAAATAAGATACCGGATAAGGTTCCTGAAGAAAACATGGGAAAAACTGGAAAGTCTCAACCTTTTGTAAAAGAAGAGGCTTTAGTTGGTATATATAATGATGTTTTCCCTTCCGAGCCTGAGCAGTTCTTTAACTTGTTATTTAACGATGATTCAAAATTTACAAGCGAGTATCGTTCAGTACGAAAGGATACTAATCTAGTGATGGGACAGTGGCATACAGCAGATGAATATGATGGTCAAGTCAGAGAGATAACCTTCAGAACTCTTTGTAACAGTCCTATGTGCCCCCCAGACACTGCCATGACAGAGTGGCAACATGTTGTTCTCTCACCAGACAAGAAAAAATTGGTGTTTGAAACCGTCCAACAGGCTCATGATGTGCCATTTGGGTCCTATTTTGAGGTGCATTGTAAATGGAGTTTGGAGACAATTAATGAAGGTTCAAGTACATTGGACATTAGAGTGGGTGCGCATTTTAAGAAATGGTGTGTGATGCAATCTAAAATCAAGGCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGAAGTTGCCCGATCTTATGTAAAGAACAACGCTTCTGGTGGTGGTGAGATTGACATGGCGGTTTCACCCCCTGCAACTTCTGACAGCTCCTAA 1761 0.4162 MNPCLMDLALDFLVPSLWEIKVTVATSMFVIIAYWFFTYRTGDFDVGRVPVDNSGDASDDKDKMLQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWYTLDSPSGQVCLHIKTRKLPANSSRINGYGGPNTRRRMPTEKQGPTVVHQKPGPLQTIFNLLPDEVVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPSITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTFRNLHRAAKIFREMLEAEKKENAESELRAQSSSVRGNKIPDKVPEENMGKTGKSQPFVKEEALVGIYNDVFPSEPEQFFNLLFNDDSKFTSEYRSVRKDTNLVMGQWHTADEYDGQVREITFRTLCNSPMCPPDTAMTEWQHVVLSPDKKKLVFETVQQAHDVPFGSYFEVHCKWSLETINEGSSTLDIRVGAHFKKWCVMQSKIKAGAVNEYKKEVDVMLEVARSYVKNNASGGGEIDMAVSPPATSDSS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00020 586 Gene3D C2 domain 63 191 IPR035892 -
Accr13g00020 586 Pfam GRAM domain 228 300 IPR004182 -
Accr13g00020 586 ProSiteProfiles C2 domain profile. 59 175 IPR000008 -
Accr13g00020 586 Pfam VAD1 Analog of StAR-related lipid transfer domain 401 546 IPR031968 -
Accr13g00020 586 SMART gram2001c 225 291 IPR004182 -
Accr13g00020 586 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 6 572 IPR044655 -
Accr13g00020 586 CDD PH-GRAM_C2-GRAM 236 344 - -
Accr13g00020 586 Gene3D - 226 344 IPR011993 -
Accr13g00020 586 FunFam BAG-associated GRAM protein 1 isoform X2 226 345 - -
Accr13g00020 586 Pfam C2 domain 80 175 IPR000008 -
Accr13g00020 586 MobiDBLite consensus disorder prediction 357 388 - -
Accr13g00020 586 CDD C2 79 175 - -
Accr13g00020 586 SMART C2_3c 78 174 IPR000008 -
Accr13g00020 586 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 187 IPR035892 -
Accr13g00020 586 ProSiteProfiles VASt domain profile. 397 567 IPR031968 -
Accr13g00020 586 MobiDBLite consensus disorder prediction 195 221 - -
Accr13g00020 586 PRINTS C2 domain signature 139 147 IPR000008 -
Accr13g00020 586 PRINTS C2 domain signature 118 131 IPR000008 -
Accr13g00020 586 PRINTS C2 domain signature 94 106 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00020 Accr-Chr13 258090 269195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00020 53 163 C2H2 Transcription Factor Family AT4G21160 24.324 3.14e-06 47.8