Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01902 ATGGACCTTGGTGGAGGAGTTCGTAAGAGGGGAAGGTCTGAAGCTCCCTTTAATGGGAATGGCGGCGTCAAGAAATCCAGGCCAGAAATGGAGTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGCCCATTTGGCGAAGGATGTCATTTCTTGCATTATGTGCCTGGGGGTATAAAAGCTGTCTCTCAGTTGATCAATATCGGTACCAGTCCTGCACTTCCACAAGCTTCAAGAAATACAACTTTTCCACCATCCTTTCCAGATGGCTCTTCCCCTCCGGCTGTCAAAACCCGCATATGCAACAAGTATAATACCGCCGAAGGATGCAAATTTGGTGATAAATGCCACTTCGCTCATGGTGAGTGGGAGATTGGAAAGCCTACAGCCCCATCATATGAAGATCCTCGTCCCTTCAGACAACTGCAAAGCAGGGTTGGTGGGCGGGTCGAGCCCCCACCTCCAGCTCATGGAGCTGCAGCCAGTTTTGGAGCCTCTGCTACTGCTAAGATTAGCATCAATGCTTCACTTGCAGGAGCAATCATTGGAAAAAATGGTGTCAATTCTAAGCAAATTTGTCGTGTGACAGGAGCAAAACTTTCGATACGGGATCATGACGCAGATCCAGGTCTTAAGAACGTTGAGCTGGAGGGCAGTTTTGATCAGATCAAACAAGCAAGTGCCATGGTTCATGAACTTATTGTAAATGTCAGTTCTGTCTCCGGGCCTCCTCCGAAAGGCATTGGACCACATGGCCCTGCCCCAGCTAGCAACTTGAAGACAAAACTGTGTGAAAACTTTGCAAAAGGATCTTGCACTTTTGGGGAAAGGTGTCATTTTGCTCATGGCGCTGAGGAATTACGCAAGCCTGGAATGTGA 909 0.4818 MDLGGGVRKRGRSEAPFNGNGGVKKSRPEMESFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQLINIGTSPALPQASRNTTFPPSFPDGSSPPAVKTRICNKYNTAEGCKFGDKCHFAHGEWEIGKPTAPSYEDPRPFRQLQSRVGGRVEPPPPAHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIRDHDADPGLKNVELEGSFDQIKQASAMVHELIVNVSSVSGPPPKGIGPHGPAPASNLKTKLCENFAKGSCTFGERCHFAHGAEELRKPGM 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01902 302 ProSiteProfiles Type-1 KH domain profile. 176 240 - -
Accr12g01902 302 SUPERFAMILY CCCH zinc finger 104 135 IPR036855 GO:0046872
Accr12g01902 302 SMART c3hfinal6 105 132 IPR000571 GO:0046872
Accr12g01902 302 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Accr12g01902 302 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Accr12g01902 302 ProSiteProfiles Zinc finger C3H1-type profile. 105 133 IPR000571 GO:0046872
Accr12g01902 302 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 167 248 IPR036612 GO:0003723
Accr12g01902 302 MobiDBLite consensus disorder prediction 1 39 - -
Accr12g01902 302 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 293 IPR000571 GO:0046872
Accr12g01902 302 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 107 132 IPR000571 GO:0046872
Accr12g01902 302 Pfam RNA-binding, Nab2-type zinc finger 43 63 - -
Accr12g01902 302 SUPERFAMILY CCCH zinc finger 39 64 IPR036855 GO:0046872
Accr12g01902 302 CDD KH-I_AtC3H36_like 180 244 - -
Accr12g01902 302 PANTHER CCCH ZINC FINGER/TIS11-RELATED 26 142 IPR045877 GO:0003729
Accr12g01902 302 SMART kh_6 175 245 IPR004087 GO:0003676
Accr12g01902 302 Pfam KH domain 179 241 IPR004088 GO:0003723
Accr12g01902 302 SUPERFAMILY CCCH zinc finger 267 298 IPR036855 GO:0046872
Accr12g01902 302 Gene3D - 267 299 - -
Accr12g01902 302 Gene3D - 100 137 - -
Accr12g01902 302 FunFam Zinc finger CCCH domain-containing protein 100 137 - -
Accr12g01902 302 Gene3D K Homology domain, type 1 172 266 IPR036612 GO:0003723
Accr12g01902 302 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Accr12g01902 302 FunFam Zinc finger CCCH domain-containing protein 263 299 - -
Accr12g01902 302 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01902 Accr-Chr12 38288485 38293554 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr12g01902 KH_1 3.2e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01902 - - gmx:100792652 488.804