Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01897 ATGCGTCGGTGGCTTTGTTGTACTCGTCATGTGGAAGACTCATATCCACCACATGAGAGTGAGCGCCTGAAAAGCCCTTATGGAGATGATGACCAAAGAGGCTCAAGAATGTCAGCCCCCATCAAACATGACCCACCAAAGTCTGCACCACCACCTATTGAAGTGCCAGCATTATCTTTAGAGGAGCTAAAGGAAAAGACTGACAACTTTGGATCAAAAGCCTTGATTGGTGAAGGATCTTATGGAAGAGTGTATTATGCAACCTTAAACAATGGAAAAGCTATTGCTGTGAAAAAGCTTGATGTTTCGTCTGAAGATGAATCAAATGTTGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAGGCATGATAATTTTGTTGAGTTGCATGGTTACTGTGTTGAGGGAAATATGCGTGTGCTGGCATATGAGTTTGCAACTATGGGCTCACTTCATGACATATTGCATGGTAGAAAGGGAGTTCAGGGGGCACAACCCGGACCAACTCTTGATTGGATGCAGCGAGTTAGAATTGCAGTAGATGCAGCGAAAGGATTGGAATATCTGCATGAGAAAGTTCAACCATCGATTATCCATAGAGATATCAGATCAAGCAATGTGCTTATTTTTGAAGATTACAAGGCAAAGATAGCTGATTTCAACCTTTCCAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACTCGAGTTTTGGGAACATTTGGTTATCATGCCCCAGAGTATGCAATGACCGGCCAATTGACACAAAAAAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACGGGAAGAAAACCTGTTGATCACACCATGCCTCGTGGACAGCAAAGTCTTGTTACATGGGCTACGCCAAGACTGAGTGAAGATAAAGTTAAACAATGCGTGGACCCAAAATTGAAGGGAGAATATCCCCCCAAAGGGGTAGCCAAGCTCGCCGCCGTTGCAGCACTGTGTGTGCAGTACGAGTCCGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCCCTTCAACCACTTCTAAAGGCTGCTGTTCCTACCCAAGAATCTTGA 1086 0.4429 MRRWLCCTRHVEDSYPPHESERLKSPYGDDDQRGSRMSAPIKHDPPKSAPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAIAVKKLDVSSEDESNVEFLTQVSMVSRLRHDNFVELHGYCVEGNMRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWMQRVRIAVDAAKGLEYLHEKVQPSIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKAAVPTQES 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01897 361 PIRSF ILK 31 360 - -
Accr12g01897 361 SMART tyrkin_6 70 348 IPR020635 GO:0004713|GO:0006468
Accr12g01897 361 Pfam Protein tyrosine and serine/threonine kinase 75 348 IPR001245 GO:0004672|GO:0006468
Accr12g01897 361 FunFam PTI1-like tyrosine-protein kinase 3 148 358 - -
Accr12g01897 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 355 - -
Accr12g01897 361 Gene3D Phosphorylase Kinase; domain 1 46 146 - -
Accr12g01897 361 Gene3D Transferase(Phosphotransferase) domain 1 148 360 - -
Accr12g01897 361 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Accr12g01897 361 SUPERFAMILY Protein kinase-like (PK-like) 47 348 IPR011009 -
Accr12g01897 361 ProSitePatterns Tyrosine protein kinases specific active-site signature. 198 210 IPR008266 GO:0004672|GO:0006468
Accr12g01897 361 ProSiteProfiles Protein kinase domain profile. 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01897 361 MobiDBLite consensus disorder prediction 13 52 - -
Accr12g01897 361 FunFam PTI1-like tyrosine-protein kinase 3 32 146 - -
Accr12g01897 361 MobiDBLite consensus disorder prediction 13 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01897 Accr-Chr12 37548398 37566826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01897 48 349 Receptor kinase-like Gene Family AT4G02010 49.180 4.79e-92 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Accr12g01897 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01897 K13436 - gmx:548003 633.639