Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01883 ATGGGTTTTTCTTTTTCACAACCACTTACTTTCCTCTTCTTCTCTTTCCTAGTTTTTGCTCTGTTGTTGAACCCAAAATGGGTATGTGGGGATACAGAGCTAAGAGCACTAATGGATATCAAAGCCGCTTTGGACCCAGAAAGCCATTATTTGTCTTCATGGACTGTTAATGGAAAACCATGTGATGGTTCGTTTGAAGGAGTTGGTTGTAACGAGAAGGGTCAAGTGGCTAACATTTCATTGCAGGGAAAAGGTCTCTATGGGAAGCTTTCGCCTGCCATTGCTGAGCTCAAGCAACTTACAGGGCTTTACTTGCATTATAACTCCTTGCAGGGAACTATTCCCAGAGAAATTGCCAACTTGACTTTCCTAAGTGACTTGTATTTGAATGTGAATAATCTATCTGGTGAAATCCCTCCTGAGATTCGCAAAATGGAGAACCTGCAAGTTTTGCAGCTTTGCTATAATCAGTTGACAGGAAGCATACCAACACAACTTGGTTCACTGAAGAAACTTGTGGTTCTTGCTTTACAGTCAAATCAATTAGCTGGTGCCATCCCTGCAAGTTTAGGTCATTTGGGAATGCTAATGAGGCTTGATCTAAGCTCTAATCGCCTCTTCGGTTCCCTTCCCTCTACATTAGCGGATGCCCCTTCGCTTCGAGTTCTAGATGTTCGCAACAACACCCTCTCTGGAAATGTACCCCCTGCTCTGAAGAGACTGAATGATGGATTTTTGTACGAGTACAATTTGGGATTATGTGGAGTTGGGTTTTCATCCTTGAAAACTTGCAATTCTTCGGATCAAAGTAATCCTGAGAGGCCTAAGAAACCTTATGGAGCTGGTTTTGGTGGTACATCAGCGAAAGATATACCAGAAACTGCAAATGTGCCACTTCCTTGCAATGGAACTCAGTGCCAAAATCCATCAAAACCCAAACAATCAGCATCTTCTATCATTGTTGGCATAGTTGTGTTTGCAATTGCAGTGCCAACAATTGGTGTTCTAACTTTCACAGAGTACCGTAGGCGAAAGCAAAAGCTCAGAAACTCATTTGATATCTCAGATAATGGTCTAATCATGAACCAAGCCAAGGGTACATACCAAAAAAACGGATCTCCTTTGGCCAGCCTTGAGTACTCTAATGGCTGGGACCCGTTGGCTGAAAGCCGGAATTTCATGGGTGATAGCTATGACGTGTTCCATAGTTTCAGGTTCAACTTGGAAGAGGTTGAGACTGCGACTCAATATTTCTCAGAGTTGAACTTGTTGGGTAGGAGTATCTTCAGCGCGACGTACAAGGGAATGCTAAGAGATGGATCTGTTGTTGCCATTAAAAGAATCAGTAAAACAAGCTGCAAGAGTGATGAGTCTGAGTTTTTGAAGGGACTTCACATTTTGACCTCACTGAGGAACGAGAATTTAGTGAGGTTGAGAGGATTTTGTTGCTCAAGGGGGCGAGGCGAGTGCTTTCTAGTCTATGATTTTGTTCATAATGGAAATCTTTCGTGCTACCTCGATGTCAACGAAGGCGAAGGACAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTTAAAGGCATCGCTGAAGGGATAGCATATTTACATGCCTACAAACCAAACAAGCCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAGGTGCTCATCGATCAGCGATTCAACCCGATGCTTTCAGATTCCGGCCTTCACAAGCTTCTTACTGATGACATTGTCTTCTCAGCACTTAAGGCTAGCGCAGCAAAGGGTTATCTGGCTCCTGAATACACGACCACCGGCAGGTTCACGGAGAAAAGTGATGTGTATGCTTTTGGAGTGCTTCTTTTGCAGATCATCTTGGGGAAAAGGAAGATCACTAGCTCGATGTGCCTTGCTGCAGAATCTTCAAGACTCGAAGAACTCATTGACCCAAATCTCCATGGAAGATTCACTGAATATGAGGCAGCGAAGCTTGTGAAAATGGCCTTGCTTTGCTCCCACGAGTCTCCTTTTGAGAGGCCATTGATGGAAGCCATTGTTCTAGAACTTGAAAGTTTCAATATTTGTCTCTGA 2073 0.4351 MGFSFSQPLTFLFFSFLVFALLLNPKWVCGDTELRALMDIKAALDPESHYLSSWTVNGKPCDGSFEGVGCNEKGQVANISLQGKGLYGKLSPAIAELKQLTGLYLHYNSLQGTIPREIANLTFLSDLYLNVNNLSGEIPPEIRKMENLQVLQLCYNQLTGSIPTQLGSLKKLVVLALQSNQLAGAIPASLGHLGMLMRLDLSSNRLFGSLPSTLADAPSLRVLDVRNNTLSGNVPPALKRLNDGFLYEYNLGLCGVGFSSLKTCNSSDQSNPERPKKPYGAGFGGTSAKDIPETANVPLPCNGTQCQNPSKPKQSASSIIVGIVVFAIAVPTIGVLTFTEYRRRKQKLRNSFDISDNGLIMNQAKGTYQKNGSPLASLEYSNGWDPLAESRNFMGDSYDVFHSFRFNLEEVETATQYFSELNLLGRSIFSATYKGMLRDGSVVAIKRISKTSCKSDESEFLKGLHILTSLRNENLVRLRGFCCSRGRGECFLVYDFVHNGNLSCYLDVNEGEGQVLEWSTRVSIVKGIAEGIAYLHAYKPNKPALVHQNISAEKVLIDQRFNPMLSDSGLHKLLTDDIVFSALKASAAKGYLAPEYTTTGRFTEKSDVYAFGVLLLQIILGKRKITSSMCLAAESSRLEELIDPNLHGRFTEYEAAKLVKMALLCSHESPFERPLMEAIVLELESFNICL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01883 690 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Accr12g01883 690 ProSiteProfiles Protein kinase domain profile. 418 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01883 690 SUPERFAMILY L domain-like 29 240 - -
Accr12g01883 690 FunFam Protein NSP-INTERACTING KINASE 2 497 687 - -
Accr12g01883 690 Gene3D Transferase(Phosphotransferase) domain 1 497 688 - -
Accr12g01883 690 Pfam Leucine rich repeat 172 230 IPR001611 GO:0005515
Accr12g01883 690 SUPERFAMILY Protein kinase-like (PK-like) 400 685 IPR011009 -
Accr12g01883 690 FunFam Protein NSP-INTERACTING KINASE 2 389 496 - -
Accr12g01883 690 Gene3D Ribonuclease Inhibitor 27 274 IPR032675 -
Accr12g01883 690 FunFam Leucine-rich repeat receptor-like kinase 32 141 - -
Accr12g01883 690 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 80 684 - -
Accr12g01883 690 FunFam Protein NSP-INTERACTING KINASE 2 143 265 - -
Accr12g01883 690 Gene3D Phosphorylase Kinase; domain 1 389 496 - -
Accr12g01883 690 Pfam Protein tyrosine and serine/threonine kinase 423 682 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01883 Accr-Chr12 36856502 36859562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01883 16 531 Miscellaneous Gene Families AT4G22730 55.153 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Accr12g01883 PK_Tyr_Ser-Thr 5.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01883 - - gmx:100789253 1040.8