Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01868 ATGGGGCAAGCGCAATCGAAGAACGAGCTTCTTTACCAGCAAGTTAGTTACGGAAACATCGAAGGAATCAAAGCCCTTCGTAGGGAGGGAGCAGGACTAGAGTGGGTGGACAGAGAAGGGAAGACGCCTTTGATTGTTGCTTGTATGAACCCTGAGCTCTATGAAGTCGCAAAAACATTGATTGAACTTGGCGCCAATGTCAATGCATACCGTCCGGGACGACATGCTGGCACTCCATTGCATCATGCAGCTAAAAGAGGCCTTGAAAGTATTGTTAAGTTGCTTCTTTTGCATGGAGCTAATGCATTGGTCTTGAATGATGATTGCCAAACTGCTCTTGATGTTGCCAGGGCCAAGGGCCACGGCAATGTTGTTCGTGCTATTGAGAGTCATCTTTGCTTGTTCTCTGGTTGGCTGCGGGAGTTCCATGGACCTGGATTCCTAGAAGTAGTAGCTCCACAGCTAGTATCTAAGAAAGTTTGGGTGGTTATTTTACCAGTTGGCTCTCGTAATCTTACCGGACCCTACAAGCTGGAGCTTGCCATATATTCTAGTATGCAGGATGCACAGCCTCGAACAGTTGTTGCTCTGTGGAAGGCCAACTTAGATCAACCAAAGCTACACCAGTCAGATCCTTCAGTGACTATTGCTGATCCTGCAACAAAAACACGCATTAAACTTGCACCTGCAAGTGAGAATGACAAGCAACAACTTAAGTGGTTCTCTGATGCATGCAAAGGAATTCCGCAGGAAAACCCAGCATTTTTGCGGAGTAACATTAGAACAGCTCCTCCCTCAGCTCCACCAGCTGCAGACGATCCAGAGGTGGCTGCTGCTATCAGAGCATCCATGCAGTCTGCCATGCATGAAAGGCCACCCCTTGCAAATCCCCTGCCAAACTTTGGAGCAAGTTCTTCAAGTGGAGTAAATACAAACAAGCATGGTTCAATTGGCACACCAAAACCGAATACAAGTGGTAGTTTGCCGACAAATGAAGGCGGACCGGGTAGCAATCCAAGTGAGCCCATTCATATCAATAATAATGAGTCTGTTTCTCAAAGTTCCAGTGGTTTGGATTTGATTCCTTCAGCTCCTCCAATTGCGGACGAGAATCCAATAGATGGCCCCATTCATTATCCGTCAATTGATTCAAGCCCTGTTGATATATCATCTCCAGCTGCAGAGAACCCACCTGAAGAAGAAAAGCATGCTGCTGGCAGCGTTTCGTCTTGTGTGATATGTTTAGATGCTCAGGCTGAGGGGGTATGCATACCCTGTGGCCACGTTGCTGGATGCATGTCTTGCTTGAATGAGGTCAAAGCAAAGAAATGGGGTTGCCCAGTTTGTCGGGCGAAGATCGATCAGGTGATAAAGATATATCACGTTTAA 1389 0.4694 MGQAQSKNELLYQQVSYGNIEGIKALRREGAGLEWVDREGKTPLIVACMNPELYEVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANALVLNDDCQTALDVARAKGHGNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVILPVGSRNLTGPYKLELAIYSSMQDAQPRTVVALWKANLDQPKLHQSDPSVTIADPATKTRIKLAPASENDKQQLKWFSDACKGIPQENPAFLRSNIRTAPPSAPPAADDPEVAAAIRASMQSAMHERPPLANPLPNFGASSSSGVNTNKHGSIGTPKPNTSGSLPTNEGGPGSNPSEPIHINNNESVSQSSSGLDLIPSAPPIADENPIDGPIHYPSIDSSPVDISSPAAENPPEEEKHAAGSVSSCVICLDAQAEGVCIPCGHVAGCMSCLNEVKAKKWGCPVCRAKIDQVIKIYHV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01868 462 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Accr12g01868 462 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Accr12g01868 462 SUPERFAMILY RING/U-box 410 456 - -
Accr12g01868 462 SMART ANK_2a 39 69 IPR002110 GO:0005515
Accr12g01868 462 SMART ANK_2a 75 104 IPR002110 GO:0005515
Accr12g01868 462 SUPERFAMILY Ankyrin repeat 7 133 IPR036770 -
Accr12g01868 462 SMART ring_2 411 449 IPR001841 -
Accr12g01868 462 ProSiteProfiles Zinc finger RING-type profile. 411 450 IPR001841 -
Accr12g01868 462 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Accr12g01868 462 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Accr12g01868 462 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Accr12g01868 462 Gene3D - 3 155 IPR036770 -
Accr12g01868 462 Pfam Zinc finger, C3HC4 type (RING finger) 410 456 - -
Accr12g01868 462 CDD RING-HC_XBAT35-like 411 460 - -
Accr12g01868 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 461 IPR013083 -
Accr12g01868 462 MobiDBLite consensus disorder prediction 285 401 - -
Accr12g01868 462 PANTHER ROLLING PEBBLES, ISOFORM B 402 459 - -
Accr12g01868 462 MobiDBLite consensus disorder prediction 299 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01868 Accr-Chr12 36197974 36202989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01868 405 459 C3H Transcription Factor Family AT3G06140 32.727 3.83e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01868 - - lang:109354249 667.537