Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01866 ATGGCAGATCTTGCTAGCTATGGGAATTCCGAGCGTGACATTGAGCAAGCACTTGTAGCTTTAAAAAAAGGCTCTCAATTACTAAAGTATAATCGAAAAGGGAAGCCAAAATTCCGTCCCTTCAGACTCTCACCTGATGCTACAACATTGATTTGGATTTCTCATGGACGGGAAAAATATATAAGGTTGTCTTCTGTTTCACGTATCATCCCTGGACAAAGAACTGCTGTATTCAGAAGGCACTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTGTTTACAAAAACGGCGAACGGACACTTGATCTGATTTGCAAGGACAAAGCTGAGGTGGAGATATGGTTTGGTGGCCTGAAGGCATTAATTTCTCCAGGACAACACGCCCTACGTTCCAAAAGTAACTTATATGATGTACAAGTTGGTGTTGACTTCTTCCCCACTAGTCGTCCTTTTGGTGCAACATTAGAGTTTGCTTCTACCATTGCACGTGGCAGGGACTCCATAGATTCTTCATTGAACTGGGCAACCTCAGATGTGGCATCAGAAGGTCCAAATATGCAACCAAGGACAAGTGCTTCAGATGGCTTCCGTGTAAGTGTGTCAAGCTCACCTAGTTGTTCAAGCATAGGATCGGGGCCAGATGACATAGAGTCACTAGGTGATGTGTATATATGGGGAGAGGTTTGGAGTGATGGGGCTTCACCTGATTGTTTGATCACGGATGTGCTGGTTCCTAAGCCATTAGAATCAAATGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTGCGTCACATTGCTTTAGTTACGAGGCAGGGAGAGGTGTTTTCTTGGGGTGAGGAATCTGGGGGAAGACTTGGTCATGGGATTGAAAAAGATTTCTGTCACCCACATTTGATTGAGTTTCTCTCTGTTCAAAATGTTGAGTTTGTTGCATGTGGTGAGTATCATACGTGTGCTATTTCTACATTGGGTGATTTATTCACATGGGGAGATGGTGCTCATAATGCTGGCCTTCTTGGTCATGGCAGTGATGTTAGTCATTGGATCCCAAAGAGAGTCACCGGCCCTTTAGAAGGTCTACAAGTTGTATCAATTGCATGTGGTACATGGCATTCTGCACTAGCAACCTCTAATGGCAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTAGGCCATGGAGATCGGAGCAGTGTATCATATCCAAGGGAGGTTCAATCATTGAGCGGACTCAAAACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTATAGAGGTTATGGGTCATCAAGGTACTAATGTTTCATCCCGAAAGCTTTTCACTTGGGGTGACGGTGACAAGTATCGATTGGGTCATGGAAACAAGGAAACCTACCTTCAACCCACTTGTGTCTCTGCGCTAATTGAGCATAATTTCCTCCAGATAGCATGTGGCCACAATATGACTGTTGCCTTAGATACATCAGGTTGTGTAGTTACTATGGGTGGCACTGCATATGGTCAGCTAGGAAATGCTTTGTCTGACGGAAAAACACCTACAAAGGTTCAAGATAAGTTGGTTGGTGAATATGTTGAGGAAATATCTTGTGGAGCAAATCATGTTGCTGTCTTAACATCAAGAAGCGAATTATATACGTGGGGCAAAGGAGCCAATGGAAGATTGGGGCATGGAGACACCCATGACCGGAAATCTCCAACACTGGTTGAAAGCTTAAAAGATAGGCATATCAGAAATGTCTCATGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGATCTCTGGACCTGATCAATCTGTTTGCTGTGGTTGTCGCCAAGCATTTGGCTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGCTTGGTGCATTGCCATGCTTGTAGCTCCAAGAAGGCTTTAAGAGCCGCATTGGCTCCAACGCCAGGAAAGCCACATCGTGTGTGCGATGCTTGTTATAATAAGCTTAAAGCTGCTGAGACTGCTAGCGCTTCTTTTACTTTTAGTAGGAAACCTACTCCACCTCGTCAATCTATAGATGGCAGGGAAAGATTGGATCGTGGAGAAGCAAGGTCTTCAAGAATTCTCGTGTCTTCCATTGCTGAGCCAGTAAAATTCCTTGAGATTTGGGGAAACAAGCCAGAATCTAAACATGATTTTTCTTCCCTTACCCGAAGTCCTCAATCAAGCTCACAATTCAAGCATGCTGCATTTCCAAGTTCATTGAAGCCCATTCATAATGCTTTCAGGTCTTCAAGTCCACCACCAACTCCACCAGCCAATTCAAGACCTGCATCGCCATATACAAGAAGGCCGAGTCCTCCACGTTCTGCCAGCCCTGGATTTTCTAGAAGCATGATTGAAAATTTGAGCAAGTCCAATGAGCATATGAACCAAGAACTCTCAAAATTGCAAAATCAAATTAGAAGTTTGAAACAGAAGAACGATAAGCAAGATATGGAGATTCAGAAGTTGAAGAAAAATGTCCAGGAAGCTACCTTGTTGACTGGAGAGGAATCCTCTAAGCATAGGCTGGCTAGGGAATTTATTAAGAGCATGACAGATCAGTTGAAAGATGTGACAGAGAATTTGCCACCAGACAATCCAAACAGTGAGATCTTGAGAAATATCCATGCTCAAGCTGAAGATTTCTTGAGAGAAAATCTAGAATGTGAAGCATCATCTTCCATACTTTCCAACACAGAGTCTAGTCAGGAAATTGGACTTGATACACCAGCTTCGGATATTGATGGTTCTAAATTGCAAGAACAGAAGCTTGAAGAAACTACTGATCCTGCTGAAGTTGAACCATCTCAACATTTAGGAAATTCTCTTCAAGAAAGTAGTAGATCATCTTTATCTATTATGGGGGCAGCAACTCCACAGCAAAGCTTAGAAAATGGTTCAAAATCACCAGACTCTATGCAACTAGGTACAGAAACAGAACAACAGGTCGTCGAACAATTTGAATCTGGTGTTTATGTGACGCTAGTAGTAAAGCCAAATGGATCAAAAGTTTTCAAACGAGTTAGATTCAGTAAAAGAAGGTTCCATGCACAACAAGCAGAAGAATGGTGGAATACAAATAAAGATAGGTTGTTTAAAACATATAGTTCACCAACAACAAATCTTGCAGCTACTGGATCATCAGCTACGTCTAACACCAACCCTTAG 3198 0.4225 MADLASYGNSERDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKYIRLSSVSRIIPGQRTAVFRRHLRPEKDYLSFSLVYKNGERTLDLICKDKAEVEIWFGGLKALISPGQHALRSKSNLYDVQVGVDFFPTSRPFGATLEFASTIARGRDSIDSSLNWATSDVASEGPNMQPRTSASDGFRVSVSSSPSCSSIGSGPDDIESLGDVYIWGEVWSDGASPDCLITDVLVPKPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEESGGRLGHGIEKDFCHPHLIEFLSVQNVEFVACGEYHTCAISTLGDLFTWGDGAHNAGLLGHGSDVSHWIPKRVTGPLEGLQVVSIACGTWHSALATSNGKLFTFGDGTFGVLGHGDRSSVSYPREVQSLSGLKTIKVACGVWHTAAIIEVMGHQGTNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEHNFLQIACGHNMTVALDTSGCVVTMGGTAYGQLGNALSDGKTPTKVQDKLVGEYVEEISCGANHVAVLTSRSELYTWGKGANGRLGHGDTHDRKSPTLVESLKDRHIRNVSCGSNFTSCICIHKWISGPDQSVCCGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYNKLKAAETASASFTFSRKPTPPRQSIDGRERLDRGEARSSRILVSSIAEPVKFLEIWGNKPESKHDFSSLTRSPQSSSQFKHAAFPSSLKPIHNAFRSSSPPPTPPANSRPASPYTRRPSPPRSASPGFSRSMIENLSKSNEHMNQELSKLQNQIRSLKQKNDKQDMEIQKLKKNVQEATLLTGEESSKHRLAREFIKSMTDQLKDVTENLPPDNPNSEILRNIHAQAEDFLRENLECEASSSILSNTESSQEIGLDTPASDIDGSKLQEQKLEETTDPAEVEPSQHLGNSLQESSRSSLSIMGAATPQQSLENGSKSPDSMQLGTETEQQVVEQFESGVYVTLVVKPNGSKVFKRVRFSKRRFHAQQAEEWWNTNKDRLFKTYSSPTTNLAATGSSATSNTNP 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01866 1065 SUPERFAMILY FYVE/PHD zinc finger 599 670 IPR011011 -
Accr12g01866 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 432 IPR000408 -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 725 744 - -
Accr12g01866 1065 SUPERFAMILY RCC1/BLIP-II 220 600 IPR009091 -
Accr12g01866 1065 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 260 270 IPR000408 -
Accr12g01866 1065 CDD FYVE_like_SF 609 661 - -
Accr12g01866 1065 Pfam FYVE zinc finger 599 665 IPR000306 GO:0046872
Accr12g01866 1065 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 419 429 IPR000408 -
Accr12g01866 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 443 494 IPR000408 -
Accr12g01866 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 675 IPR013083 -
Accr12g01866 1065 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Accr12g01866 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 325 IPR000408 -
Accr12g01866 1065 Gene3D - 176 438 IPR009091 -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 673 698 - -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 944 960 - -
Accr12g01866 1065 Gene3D - 440 600 IPR009091 -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 729 744 - -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 759 782 - -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 684 698 - -
Accr12g01866 1065 SUPERFAMILY PH domain-like 13 123 - -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 904 960 - -
Accr12g01866 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 598 IPR000408 -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 753 792 - -
Accr12g01866 1065 ProSiteProfiles BRX domain profile. 991 1046 IPR013591 -
Accr12g01866 1065 Gene3D - 13 130 IPR011993 -
Accr12g01866 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Accr12g01866 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 380 IPR000408 -
Accr12g01866 1065 CDD PH_PLC_plant-like 12 124 - -
Accr12g01866 1065 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 603 665 IPR017455 -
Accr12g01866 1065 PRINTS Chromosome condensation regulator RCC1 signature 383 397 IPR000408 -
Accr12g01866 1065 PRINTS Chromosome condensation regulator RCC1 signature 484 502 IPR000408 -
Accr12g01866 1065 PRINTS Chromosome condensation regulator RCC1 signature 542 563 IPR000408 -
Accr12g01866 1065 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Accr12g01866 1065 PRINTS Chromosome condensation regulator RCC1 signature 276 292 IPR000408 -
Accr12g01866 1065 PRINTS Chromosome condensation regulator RCC1 signature 326 342 IPR000408 -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 928 942 - -
Accr12g01866 1065 MobiDBLite consensus disorder prediction 904 918 - -
Accr12g01866 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 380 429 IPR000408 -
Accr12g01866 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 274 322 IPR000408 -
Accr12g01866 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 326 376 IPR000408 -
Accr12g01866 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 445 491 IPR000408 -
Accr12g01866 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 548 595 IPR000408 -
Accr12g01866 1065 Pfam Transcription factor BRX N-terminal domain 846 876 IPR027988 -
Accr12g01866 1065 FunFam PH, RCC1 and FYVE domains-containing protein 1 192 434 - -
Accr12g01866 1065 Coils Coil 795 843 - -
Accr12g01866 1065 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 59 859 - -
Accr12g01866 1065 SMART fyve_4 597 666 IPR000306 GO:0046872
Accr12g01866 1065 Pfam Transcription factor regulating root and shoot growth via Pin3 990 1045 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01866 Accr-Chr12 36138721 36148483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01866 985 1062 Major Intrinsic Protein MIP AT1G31880 32.051 1.31e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01866 - - qsa:O6P43_021414 1415.21