Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01803 ATGGCTTCTCTTCTACCATTTCAGGACCTCAATTGCTTCCCTAACCCTCATATTGTCATCAGTAACGCCACTGATCCCATCAATGTCGGACCTACTCTCTCCTCCAAAACGAGCATTCCAGTATTGGTGCCTAAGCCGGAGCCTTTAGACGATCTGTTTGAACCCCAAGAGCTAGAGCAAACCCAAGAAACCATCATTTCAACTTGTAACCCTAAGAATGCATCGTCTAATTCCAAACCTGCTTGTGCTGAAATCCCACAAGGCGTTCCGATTGAAGACCATGTGTATTCAGAGTTCAATCGAATTTCTGAAATGTTTTGGGCAGCATTTCCTGATAATGTACAGCAATCCGGAGATGGCAACGTTTCAAACGGTGATTCGAGGGCTATTGTTCCTGTACCAAAGGAGAACACGCAGGTTTCTTCGGTGGTGGTTGCTACTCGGAAGCGAAGCTCCCACCGCGTCAAGGAGTTGGTAAGGGTTGGCGGTTTTACCATTGCGGACGAAAGGCAACATCGTGCCACAGTCAGAAGGACTAGGATGGTATACGATTCGTTGCGCATTTTGACTTCAATAGAGGAGAAGAAAAGTAGTGATGATTCAGCTAAACGTAAGCGACCACGAGGTGATACGCGTGCTGCCACCTTGTTGAGATACCGTGGGATGTGGCTTAATCGAGATAAACGAATAGTGGGTGCTATTCCAGGCGTTAATGTTGGCGATTTGTTCCTTTATAGGATGGAACTGTTAGTAGTTGGTTTGCACTGTCAAACTCAAGCTGGAATTGATTATCTTCCTGCAAGCATGAGTCCAAATAGGGAGCCAATAGCAACTAGTGTTATTGTATCAGGCGGGTATGAGGATGACATAGATGATGGTGACGTTATAATTTATACAGGACATGGAGGGCAAGATGCTAAGCATTCAAAGCAAGTTGCTCATCAGAAGTTAGAAGGAGGAAATCTTGCATTGGAGAGAAGCATGCGATACGGGGTTGAAGTACGGGTTGTTCGGGGGATTAAACACGAGGGAAGTGCTTCAAGTTCAAATAAGGTTTATGTATATGATGGCTTGTATCAAATCGCTGATTGCTGGTTCGAATTGGGTAAGTCTGGTTTTGGAGTTTACAAGTATAAGCTTCTGAGAATTGATGGGCAAGAAAAATTGGGTAGTGCTATTCTTAAACATGCTAGGCTTCTTAAGGTTGATCCACTTCTATCTGATTCTTTGTGTTGCTTGAGTCTTGATATTTCGCTCAACAAAGAGAGTGTTCCCGTTCGTCTCTTCAATGACATTGATGCCGATGATAATCCTCTTCGTTTTGAGTATCTTCCAAGGACTAGTTTTCCTCATTTTGTATTTCATCAGAGTGGAAGTGCTACTGGTTGTGAGTGTGTGCAAGGTTGTTCTGATGACTGTTTTTGCGCTATGAAAAATGGAGATGGATTTCCTTATAATAGAAGTGGGATTCTGTTGAGAGGGAAGCCCGTAATTTTTGAATGTGGTCCATTCTGCCGTTGTCCTCCTCATTGTCAAAATCGTGTGACTCAAAAAGGGATGAAAATTAGATTGGAAGTATTTAGGTCTAGGGAAACAGGCTGGGGAGTTAGGTCCTTGGATGTTATCCATGCTGGTGCCTTTATCTGTGAATATACAGGGGTCGTAGTGACAAAGGGGCAAGCACAAATTTTGACTATGAATGGTGATGCAATGATATATCCAAGTCGGTTTCCTGATAGGTGGGCAGAATGGGGGGATTTATGTCAGATATACTCTAATTATGTGCGTCCATCCTATCCTTCAATTCCTCCATTAGATTTTGCCTTGGATGTTTCAACAATGAGGAACGTTGCTTGCTATATCAGGCACAGTTTAACTCCAAATGTGTTTGTCCAGTTTGTGCTCTATGATCACAATAACTTGATGTTTCCTCACCTTATGCTTTTTGCAATGGAGACCATCCCTCCATTGAGGGAGCTCACTTTGGATTATGGAGTGGTTGATGATTGTACAGGCAAGCTCTTAATATGTAATTAG 2037 0.431 MASLLPFQDLNCFPNPHIVISNATDPINVGPTLSSKTSIPVLVPKPEPLDDLFEPQELEQTQETIISTCNPKNASSNSKPACAEIPQGVPIEDHVYSEFNRISEMFWAAFPDNVQQSGDGNVSNGDSRAIVPVPKENTQVSSVVVATRKRSSHRVKELVRVGGFTIADERQHRATVRRTRMVYDSLRILTSIEEKKSSDDSAKRKRPRGDTRAATLLRYRGMWLNRDKRIVGAIPGVNVGDLFLYRMELLVVGLHCQTQAGIDYLPASMSPNREPIATSVIVSGGYEDDIDDGDVIIYTGHGGQDAKHSKQVAHQKLEGGNLALERSMRYGVEVRVVRGIKHEGSASSSNKVYVYDGLYQIADCWFELGKSGFGVYKYKLLRIDGQEKLGSAILKHARLLKVDPLLSDSLCCLSLDISLNKESVPVRLFNDIDADDNPLRFEYLPRTSFPHFVFHQSGSATGCECVQGCSDDCFCAMKNGDGFPYNRSGILLRGKPVIFECGPFCRCPPHCQNRVTQKGMKIRLEVFRSRETGWGVRSLDVIHAGAFICEYTGVVVTKGQAQILTMNGDAMIYPSRFPDRWAEWGDLCQIYSNYVRPSYPSIPPLDFALDVSTMRNVACYIRHSLTPNVFVQFVLYDHNNLMFPHLMLFAMETIPPLRELTLDYGVVDDCTGKLLICN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01803 678 ProSiteProfiles YDG domain profile. 232 382 IPR003105 -
Accr12g01803 678 Gene3D SET domain 394 678 IPR046341 -
Accr12g01803 678 SMART G9a_1 227 386 IPR003105 -
Accr12g01803 678 SMART preset_2 414 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr12g01803 678 SUPERFAMILY SET domain 410 666 IPR046341 -
Accr12g01803 678 Pfam SET domain 533 665 IPR001214 GO:0005515
Accr12g01803 678 Gene3D - 226 393 IPR036987 -
Accr12g01803 678 Pfam SAD/SRA domain 231 386 IPR003105 -
Accr12g01803 678 Pfam Pre-SET motif 418 514 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr12g01803 678 SUPERFAMILY PUA domain-like 213 395 IPR015947 -
Accr12g01803 678 ProSiteProfiles SET domain profile. 522 665 IPR001214 GO:0005515
Accr12g01803 678 SMART set_7 522 671 IPR001214 GO:0005515
Accr12g01803 678 ProSiteProfiles Pre-SET domain profile. 461 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr12g01803 678 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 115 666 - -
Accr12g01803 678 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 85 678 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01803 Accr-Chr12 33809443 33811479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01803 148 666 Su(var)3-9 homologs AT5G04940 39.811 4.52e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr12g01803 SAD_SRA 7.8e-49 CL0178