Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01800 ATGGCTTTGCCAGAATGTCCGGCGGCACAACTAGCCCAATTATTTGGCGGCAACACAACCAATTCCGCGGCCGCTGCCAGCTTCATCTGTGACAGATTCACCGCCGTCACCAACAAGTTCTCCGACACCACCTTCGCCGTGGACAGCACCTACCTCCTCAACTCTGCTTACCTCGTTTTTGCTATGCAACTTGGATTTGCCATGCTCTGTGCCGGCTCCGTTCGTGCCAAGAACAGTATGAACATCATGCTTACCAACGTCCTTGATGCCGCCACCGGTGGTCTCTTCTACTATCTCTTCGGTTTTGCTTTCGCCTTTGGAGCTCCCTCCAATGGTTTCATCGGCCGCCACTTTTTTGGTCTTAAAGACATCCCAGACACAAACTTTGACTACAGCTACTTCCTTTATCAGTGGGCTTTTGCCATCGCCGCCGCTGGGATCACCAGCGGCTCTATCGCAGAGAGAACACAGTTTGTGGCCTATCTGATCTACTCATCTTTCTTAACAGGCTTTGTTTATCCCGTTGTGTCTCACTGGTTCTGGTCGAGTGACGGTTGGGCCAGTGCGACCAACTCATCCAACTTACTTTTTGGTACCGGAGTGATAGATTTCGCCGGCTCCGGTGTGGTTCACCTCGTCGGTGGTATTGCTGGTCTATGGGGTGCTCTCATCGAAGGTCCCAGAATTGGCAGATTCGATCATACAGGTCGACCCATAGCTCTTCGTGGACACAGTGCCACTCTTGTCGTTCTCGGAACTTTCTTGCTCTGGTATGGATGGTATGGATTCAATCCAGGTTCGTTCACAAAGATTCTCAGCGCTTACGAATCAGGAAGTTATTACGGCCAGTGGAGTGCGGTGGGCCGAACTGCCGTGACAACCACATTAGCTGGTTGCTCCGCTGCTTTAACCACACTCTTTGGCAAGCGGATTCTCTCTGGCCACTGGAACGTGACGGACGTCTGTAACGGTTTGCTCGGTGGGTTCGCTGCCATCACTGCTGGCTGCTCTGTCGTGGAGCCATGGGCTGCGATTATTTGTGGGGTCGTGGCGGCTGCGGTTTTGATTGGTTGCAACAAGCTGGCAGAGAAGATGAGGTACGATGATCCGCTGGAGGCGGCGCAACTGCACGGCGGCTGTGGCGCGTGGGGGATAATCTTTACGGCGTTATTCGCAAAGAGGGAGTATGTGGATCAAGTGTACCCGGGTAAAGCGGGTCGGCCACACGGGTTGTTCATGGGTGGTGGAGGGAGGCTATTGGGTGCTCACGTGATCCAGATTCTGGTGATAGTCGGGTGGGTCAGCGCCACCATGGGCACACTGTTCTTTATTCTTCATAAGCTCAAACTATTACGGATCTCGCCGGAGGACGAAATGGCGGGTATGGATCTGACGAGACATGGAGGATTTGCGTACGTGTACGAAGATGAATCACAAAAACATGGGATTCAGTTGAGGAAAATCGAACCCAACGCTACTACTCCGTCTCCCCCAACGGAACTGTAA 1506 0.5292 MALPECPAAQLAQLFGGNTTNSAAAASFICDRFTAVTNKFSDTTFAVDSTYLLNSAYLVFAMQLGFAMLCAGSVRAKNSMNIMLTNVLDAATGGLFYYLFGFAFAFGAPSNGFIGRHFFGLKDIPDTNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSSDGWASATNSSNLLFGTGVIDFAGSGVVHLVGGIAGLWGALIEGPRIGRFDHTGRPIALRGHSATLVVLGTFLLWYGWYGFNPGSFTKILSAYESGSYYGQWSAVGRTAVTTTLAGCSAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGVVAAAVLIGCNKLAEKMRYDDPLEAAQLHGGCGAWGIIFTALFAKREYVDQVYPGKAGRPHGLFMGGGGRLLGAHVIQILVIVGWVSATMGTLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYEDESQKHGIQLRKIEPNATTPSPPTEL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01800 501 FunFam Ammonium transporter 29 487 - -
Accr12g01800 501 Gene3D Ammonium transporter AmtB like domains 27 492 IPR029020 -
Accr12g01800 501 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Accr12g01800 501 NCBIfam ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Accr12g01800 501 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Accr12g01800 501 PANTHER AMMONIUM TRANSPORTER 22 475 - -
Accr12g01800 501 SUPERFAMILY Ammonium transporter 47 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01800 Accr-Chr12 33602288 33603793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01800 5 496 Inorganic Solute Cotransporters AT4G13510 79.757 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01800 K03320 - qsa:O6P43_022085 828.165