Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01782 ATGGAGTCTCTTGGTTTTGTGGATGACCTCCTGAATTTCTCATCTGACGTAGGTGAAGAAGATGATGAGGAAGATAAACCTAGGAAAGCCCTGTCTTCTCTTGGCCTTGAATGTAGTGGTCCAGCATCATTAAATGCTTTGGAAGCAGATGACCCAATCCATTCCTTTCCTGAATTGCCAGAAGAAGAGCTTGAATGGCTATCCAACAAAGATGCTTTCCCGGCGGTTGAAACATTTGTTGACATGCTTTCTATTCAACCAAACTTACCGAAGCCCCAAACGCCAGTCTCAACACTTGAATACAGTGCAAGTAGTATCAACAGTAATAGCAGTGCAAACAATGTTACCCTCCTAGATGGCTTTAATCACATTAATGTTCCTGTCCGAGCACGAAGCAAGCGTCGTAATAGGCGACCTCGTGGTGTTGCTGACATATCCAGCTGGCAGTTTTGGTGGAACCAGCCAAGTAACACGATTACCAAACCTGAAGCAATGTTAACAATCTCAGTAATAGGGAGGAAATGCCAGCACTGTGGAGCAGAGAAAACTCCACAGTGGCGGGCAGGACCCCTCGGGCCTAAAACTCTTTGCAATGCTTGTGGGGTTAGGTATAAGTCTGGGAGACTTTTGCCGGAATATCGCCCTGCAAGCAGCCCTACATTTTGTGGTGAGTTGCATTCAAATTCTCACAGGAAGGTAATCGAGATGAGAAAGCAAAAACAAATGGGAAGCCAGGGATGA 741 0.4575 MESLGFVDDLLNFSSDVGEEDDEEDKPRKALSSLGLECSGPASLNALEADDPIHSFPELPEEELEWLSNKDAFPAVETFVDMLSIQPNLPKPQTPVSTLEYSASSINSNSSANNVTLLDGFNHINVPVRARSKRRNRRPRGVADISSWQFWWNQPSNTITKPEAMLTISVIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPASSPTFCGELHSNSHRKVIEMRKQKQMGSQG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01782 246 FunFam GATA transcription factor 167 246 - -
Accr12g01782 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 232 - -
Accr12g01782 246 CDD ZnF_GATA 174 221 IPR000679 GO:0006355|GO:0043565
Accr12g01782 246 PANTHER GATA TRANSCRIPTION FACTOR 37 241 - -
Accr12g01782 246 SMART GATA_3 169 219 IPR000679 GO:0006355|GO:0043565
Accr12g01782 246 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Accr12g01782 246 Gene3D - 169 220 IPR013088 GO:0006355|GO:0008270
Accr12g01782 246 Pfam GATA zinc finger 175 209 IPR000679 GO:0006355|GO:0043565
Accr12g01782 246 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01782 Accr-Chr12 32732421 32736165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01782 1 243 C2C2-Gata Transcription Factor Family AT3G24050 42.857 4.92e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr12g01782 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01782 - - qsa:O6P43_022116 317.39