Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01771 ATGGATCACAGTGAAGAATTTTTCTCTGATTCAAACCTCTCTTCATTTGTCTGCTCTGAGGGCGATTACGATGTGTTCCTAAGTTTTAGAGGCGAAGATTGCCGCTATGGTTTCGCTGGTAATCTCTACAATGCTTTGAAGCAGAGGGGAATCAATACGTTCATGGACAACAAGGAGCTTCAAAGAGGGCATGAAATTTCACCTTCTCTTGTTAAAGCAATTGAGAATTCTAGAATTGCTATCGTTGTGTTCTCCGAAAATTATGCTTCCTCTACGTGGTGCTTGGAAGAACTTGTGAAAATTGTTTCTTGTAGAGAAACCAAGGGTTGTTTGGTTTACCCAATCTTCTACAATGTGGATCCGTCTGAAGTTCGACATCAAAGAGGGCATTATGGAGCAGAAATGGCTAAGCATGAAGAAAAATTTAAGGGTGATAATCTCAAAGTGCAACAATGGAGGTCCGCTCTGTATGAAGCATCTAATTTAGCCGGTTGGAATTATAGAGATGGGTATGACTATGAATATCAGTTTATTGAAGAAATAATTGTCATGGTCTCCAACAAATTACCTCCTAAGCATTTACATGTTGCCGATTATCCCATAGGTTTGGAGTACCGTGCTTCACAAGTAATTTCATTGTTTAATTTCAATAGTGATTGTGTCAACATGATTGGAATTTGTGGAATTGGTGGAATTGGTAAAACAACTTTAGCACGATCTGTGTATAATTTTATTCTTGACCGCTTTGAAGGTTCATGTTTTCTTGCTGATGTTAGAGAAAGTTCAATCAAACATGGGTTAGAACATCTGCAAGAGTCAATTCTTTTTGATATACTAGGAGAGAAGAATATCAAGCTTGGTGATTCCCACAAAGGAATTCCAATCCTAATAAAGAAGTTGCACAACAAGAAGGTTGTTTTGATACTTGATGATGTCGACAAATTGGAACAATTGAAGAAATTAGCAGGAGATCGTGATTGGTTCGGTTCAGGAAGTGCAATTATCATAACTACTAGGGATAAACATATTTTAACTGCTCATGGAGTTGAAAAAATATATGAGGTGCCAAAATTCAGTGATCATGAAGCTCTTGAACTCTTGCAAGTTCATGCATCTAAAAAGGGGAAAACAGATACATGTTATATGGAAGTCTGGAAACGTGCAGCTCTTTATGCTGGTGGCCTTCCATTGGCTTTGAATGTTATCAGTTCTCATTTATTGGGTAAGTCAACCAATGAATGGGAACTTGCATTGGAAAGATTTGAAAAGGTTCCTAATGAAGAAATTATGAGCATACTTAGAGTGAGCTTTGATAGTTTGAACCCAAGTGAGAAGCAAGTTTTCCTTGATATTTCATGTTTCTTTGCTGGGGATTTGTTGGCTTATGTAGAAGAAGTTCTACATGCTTGCGGCTTCTTTCCAAAATATAGCATTGGAGTTCTTATTGATAGATCTCTTGTTTCTATCAGTGTGAATAAAAGGGTAATGATGCATGATCTTATTAAAGGCATGGGCAGAGAGATAGTACGACAGGAATCACCATTTCATCTTGGCAAACGAAGCAGGCTATGGTTATATGAGGATGTTCTTCAAGTTCTTCAACACAATATGGGAACTGATAAAATCGAAGTCATAATGTTGGACAACATAGCTCAAGGAAAGGAATTGAAATGGGGTAGGAAGGCCTTCAAGAAGATGAAAAGCTTGAGAATGCTTATTATTAGGAATGCCTGTTTCTCAAGAGGACCCAGGTATCTCCCAAATAGCTTAAGAATTCTTGAGTGGGCAGGATATCCTTCAAGGTCTTTCCCCCCTAATTTTCGTCCAACAAATCTTGCCATCCTCAACTTACCTAGCAGTTGGCTCAATTTGGACAGGCCATTTAAGAATTTGAAGTGTTTGACCAGCATGGATTTCACTGATTCGCAATTCTTAACAGAATTTCCTGAAGTGTCTGAACTTCCAAATTTAAGGAAATTGTATCTTGATAATTGCACTAATCTGATTGAACTTCATGAGTCTGTTGGATTTCTTAGTCATCTTGAAGAGCTGAGTGTTGCAGGATGCAGAAATCTAAAATCAATTCCGTCTGGTTTCAATTTGCCTTTTCTGAGATTCCTTTCTCTCTTCGACTGTCAAAAACTTGTGAGATTCCCTGAAATAGTAGGATTTATGGAAAATTTACAGCATATCGATTTGCAGCAAACTTCCATAGAAGGATTGCCATTTTCTATCGGAAATCTGATTGGGCTTGAATCTCTGAATCTGATGGAATGCTTTAGCATCATTAAAGTTCCCAGCAGCATTTTTACATTGCCAAGACTTAGGGAAATTGAAGCCAACTTTTGTAAAGGATTAGTATTTTTTAATGAGAGTAGTGATCATGAGAAATTGAAATTGTCTCTAAGCAGGATTAAGCTGCATTTGAGTTCTTGCAATCTGCTAGATGAATTTCTTGGTACGTGCCTAAGTGGTTTTGTAAACGTTGTACATCTGGACCTATCTTACAGTGACCTGAGACTCCTTCCAGCATGCATCCAAGAATGCATCCACTTGAAGGTTCTTTTGTTACATGACTGCAAGCAGCTTTGTGACATTTCCGGAATACCACCAAATTTAGTAGAAATAGATGCATCAAATTGCACATCTTTGACTTCCCGATCCTCAAGCATATTATTGAGCCAGGACTTTCATGCAGTAGGGAACAAGAATTTAGTGCTTCCAGGATCAAGAAGTCCAGAATGGTTTGATCATTGCAGCCAGGCAAGAGTAGTAACTTTCTGGGGCCGTGGTAGATTCCCGGGAATTGCTCTTTGCGCTGGTTTTAGCACATGGGGAAATCTCCCCCGAAACTTTCCAGTTCGGTTCTACATACAAATCAATGGCCGGACATTGATACTACCCAGATATTGTTGCAATTGGCCAATCATTGAAGGGCATTTGTGGGTGTTTGATCTACGAGTCCTTTTCCTAGCTAGTAGTCTCAAAGGGCTATTTCTAGAGCAGGAATGGAATCATGTGGAAATTTCTTGTGGGGATTATGCAGTAGAAAATGGATCAACAAGTGATGAAGTAGTGAAATTCCTTGCCATATATGTTTACAGGGAAGAAAGTAGAATGGAGGATGTCCTATTCCCAAACTCTGGTCATGCACAAGACAAGGGTTTTGGTCATACTTATGGAAGTGTTGTTGATGACACTTATCTTATAAAGTCAGGAGATTGTGGAACATCTCGTTATAGCTACTGCGAAGAGAATTGTGACAACTTCAGTAGCTATTCTTCGGGTAAAAGGCAGAGATTTATATGA 3309 0.3868 MDHSEEFFSDSNLSSFVCSEGDYDVFLSFRGEDCRYGFAGNLYNALKQRGINTFMDNKELQRGHEISPSLVKAIENSRIAIVVFSENYASSTWCLEELVKIVSCRETKGCLVYPIFYNVDPSEVRHQRGHYGAEMAKHEEKFKGDNLKVQQWRSALYEASNLAGWNYRDGYDYEYQFIEEIIVMVSNKLPPKHLHVADYPIGLEYRASQVISLFNFNSDCVNMIGICGIGGIGKTTLARSVYNFILDRFEGSCFLADVRESSIKHGLEHLQESILFDILGEKNIKLGDSHKGIPILIKKLHNKKVVLILDDVDKLEQLKKLAGDRDWFGSGSAIIITTRDKHILTAHGVEKIYEVPKFSDHEALELLQVHASKKGKTDTCYMEVWKRAALYAGGLPLALNVISSHLLGKSTNEWELALERFEKVPNEEIMSILRVSFDSLNPSEKQVFLDISCFFAGDLLAYVEEVLHACGFFPKYSIGVLIDRSLVSISVNKRVMMHDLIKGMGREIVRQESPFHLGKRSRLWLYEDVLQVLQHNMGTDKIEVIMLDNIAQGKELKWGRKAFKKMKSLRMLIIRNACFSRGPRYLPNSLRILEWAGYPSRSFPPNFRPTNLAILNLPSSWLNLDRPFKNLKCLTSMDFTDSQFLTEFPEVSELPNLRKLYLDNCTNLIELHESVGFLSHLEELSVAGCRNLKSIPSGFNLPFLRFLSLFDCQKLVRFPEIVGFMENLQHIDLQQTSIEGLPFSIGNLIGLESLNLMECFSIIKVPSSIFTLPRLREIEANFCKGLVFFNESSDHEKLKLSLSRIKLHLSSCNLLDEFLGTCLSGFVNVVHLDLSYSDLRLLPACIQECIHLKVLLLHDCKQLCDISGIPPNLVEIDASNCTSLTSRSSSILLSQDFHAVGNKNLVLPGSRSPEWFDHCSQARVVTFWGRGRFPGIALCAGFSTWGNLPRNFPVRFYIQINGRTLILPRYCCNWPIIEGHLWVFDLRVLFLASSLKGLFLEQEWNHVEISCGDYAVENGSTSDEVVKFLAIYVYREESRMEDVLFPNSGHAQDKGFGHTYGSVVDDTYLIKSGDCGTSRYSYCEENCDNFSSYSSGKRQRFI 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01771 1102 SMART AAA_5 220 358 IPR003593 GO:0016887
Accr12g01771 1102 Gene3D - 22 187 IPR035897 -
Accr12g01771 1102 Gene3D Ribonuclease Inhibitor 721 936 IPR032675 -
Accr12g01771 1102 Gene3D Ribonuclease Inhibitor 546 720 IPR032675 -
Accr12g01771 1102 PRINTS Disease resistance protein signature 392 406 - -
Accr12g01771 1102 PRINTS Disease resistance protein signature 652 668 - -
Accr12g01771 1102 PRINTS Disease resistance protein signature 223 238 - -
Accr12g01771 1102 PRINTS Disease resistance protein signature 299 313 - -
Accr12g01771 1102 SUPERFAMILY "Winged helix" DNA-binding domain 428 534 IPR036390 -
Accr12g01771 1102 ProSiteProfiles TIR domain profile. 21 189 IPR000157 GO:0007165
Accr12g01771 1102 SUPERFAMILY L domain-like 556 892 - -
Accr12g01771 1102 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 190 - -
Accr12g01771 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 451 IPR027417 -
Accr12g01771 1102 Pfam NB-ARC domain 222 434 IPR002182 GO:0043531
Accr12g01771 1102 Pfam TIR domain 23 190 IPR000157 GO:0007165
Accr12g01771 1102 SMART till_3 22 162 IPR000157 GO:0007165
Accr12g01771 1102 Gene3D - 188 352 IPR027417 -
Accr12g01771 1102 Gene3D - 358 441 IPR042197 -
Accr12g01771 1102 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 720 IPR044974 GO:0006952
Accr12g01771 1102 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 165 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01771 Accr-Chr12 32339901 32344634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01771 19 862 WRKY Transcription Factor Family AT4G12020 29.931 3.13e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01771 - - gmx:100796191 1087.02