Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01682 ATGGACAAGTGTCCTTTGCCAATAAAAAGTAACACCCATGAGAATAAGAAGAGGGTGTTATCTGGGAAGGAAGCGTTGTCGAAGCTTTTAAGATGGCATTTTGGTTACCCTGATTTTAGGGGCAATCAATTGGAGGCTATTCAAGCTGTTCTTTCCGGAAGAGATTGTTTTTGCCTTATGCCAACAGGAGGAGGGAAGTCATTATGTTATCAGATCCCTGCATTAGCTAAAACAGGAATAGTTCTTGTTATTTGTCCTTTAATAGCTTTGATGGAAAACCAAGTGATGTCATTAAAAGAGAAAGGAATTGCTGCGGAATTTCTCTCCTCAACCCAAACAGCTGATGCAAAAAATAAGATTTATGAGGACCTTGATTCTGCAAAGCCTTCTATAAGGCTGCTATATGTCACTCCAGAATTGATAGCAACACAGGGTTTTATGTCAAAGCTGAAAAGAATATATACTAAAGGGTTGTTGAATCTCATTGCCATAGATGAGGCACATTGCATCTCAACTTGGGGCCATGATTTCAGGCCTAGCTACCGTAAGCTTTCATCCTTGAGGGACCACTTTTTGGATGTGCCAGTGTTAGCTCTGACTGCTACAGCTGCTCCTAAGGTACAGAAGGATGTGGTGAAGTCATTGAACTTGCAAAATCCATTAATACTAAAGTCATCTTTTAATCGTCCTAATATCTACTATGAAGTTCGATACAAAGATCTTTTGGAAGATGCTTATAGTGATCTATCCAATATGCTAAAATCTAAGGGAGATGTCTGTGCAATTGTTTACTGCCTTGAGCGTTCAACATGTGATGACCTGGCGGCTCATCTATTACAAAATGGCATTTCTTGCGCTGCCTATCATGCAGGGTTGAATAGTAAATTGCGGACTTCTGTGTTGGATAATTGGATTTCATCTAAGATACAAGTTGTTGTTGCCACTGTTGCTTTTGGGTTAGGCATTGACAGAAAGGATGTCAGAATTGTGTGCCACTTTAATATTCCCAAGTCAATGGAGGCATTCTATCAGGAGTCAGGCAGGGCAGGTCGTGATCAGTTGCCGTCTACAAGTTTTTTGTACTATGGAGTAGATGATCGCAAAAGAATGGAATTTATATTAAGCAAATCTGGAAGCAATAAATCACAGTCATCAAGCTCTCAAGAAGAATCATCTGAAAGGTCCCTAGCTGACTTTAATCAGATGGTTGAATACTGTGAAGGATCTGGATGCCGAAGGAAAAAGATTCTTGAAAGTTTTGGAGAGCAGGTGACTGCATCACTATGTGCAAAATCATGTGATGCCTGCAGACATCCAAACTTGATTGCTAGATGTTTGGAGGACGTAATAGCTGCCCGTTCTTTACACCAGAAATATAATTCCTCTCGAGTCATTATCAGCAGTTCAACAGGTGGAGTTGATGAAGAACAAGTATCTGAATTCTGGAATCGCAATGAAGAAGCAAGTGGATCAGATGATGATATTTCTGATTCAGATGATGGTACTGAGATTGTCAACAACCTAACTGGACCAAAGTCTAAATCCAGATTGAGAGTGGAAGAAAAAATTGCTTTGTTGCAACGTGCTGAAGAAAATTTCTACCAAAAAGAAAACGCTGATAAACAGAGAAACAAGGTTGACAAGAATGCTATATCTGACACAATGAGAAGAGCAAGCAAGGAAAAACTGCAAAATTCTCTTAAGCAGGCCCAGCAACGGCTCCACAACTTGCAGATTGGTGTGGAATCCTCGGCATCTTTTCTTGAAGATGAATGCTACAAGAAATATGGGAAGGTTGGCAAATCATTCTATTATTCACAGGTGGCAAGTACTGTTACGTGGCTCTCAACTACAAATTCAGCCGATCTGATGAGTCGCCTTGGAGGGACTAATGCTTCCTCATCAATGATCGTATCGCCTGAAGCAGAAAATCCCCTTTCAACGCCACCTTCGTCAGATCCTTCTGGGAAGGAAGGGACTGGCAATGAACCTGATGCCATTGCTGAGTTAGAAACCTTCAAAAATTCATCCATGGAGACAAAGTTGCCGCCAATTCCATCCTTCTCGGAGTTTGTTAGCAGTAAGAAGGTAAAAGGTGACCAGAGAAGAACCAAACAAGAGCACTCACCAAGAGTGGAGAAAAGGTCCAGGCTATCATAG 2160 0.4106 MDKCPLPIKSNTHENKKRVLSGKEALSKLLRWHFGYPDFRGNQLEAIQAVLSGRDCFCLMPTGGGKSLCYQIPALAKTGIVLVICPLIALMENQVMSLKEKGIAAEFLSSTQTADAKNKIYEDLDSAKPSIRLLYVTPELIATQGFMSKLKRIYTKGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRDHFLDVPVLALTATAAPKVQKDVVKSLNLQNPLILKSSFNRPNIYYEVRYKDLLEDAYSDLSNMLKSKGDVCAIVYCLERSTCDDLAAHLLQNGISCAAYHAGLNSKLRTSVLDNWISSKIQVVVATVAFGLGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSFLYYGVDDRKRMEFILSKSGSNKSQSSSSQEESSERSLADFNQMVEYCEGSGCRRKKILESFGEQVTASLCAKSCDACRHPNLIARCLEDVIAARSLHQKYNSSRVIISSSTGGVDEEQVSEFWNRNEEASGSDDDISDSDDGTEIVNNLTGPKSKSRLRVEEKIALLQRAEENFYQKENADKQRNKVDKNAISDTMRRASKEKLQNSLKQAQQRLHNLQIGVESSASFLEDECYKKYGKVGKSFYYSQVASTVTWLSTTNSADLMSRLGGTNASSSMIVSPEAENPLSTPPSSDPSGKEGTGNEPDAIAELETFKNSSMETKLPPIPSFSEFVSSKKVKGDQRRTKQEHSPRVEKRSRLS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01682 719 FunFam RecQ family DNA helicase 229 454 - -
Accr12g01682 719 NCBIfam RecQ family ATP-dependent DNA helicase 29 439 IPR004589 GO:0004386|GO:0006310
Accr12g01682 719 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 241 393 IPR001650 -
Accr12g01682 719 MobiDBLite consensus disorder prediction 632 658 - -
Accr12g01682 719 Gene3D - 229 453 IPR027417 -
Accr12g01682 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 373 IPR027417 -
Accr12g01682 719 Coils Coil 560 580 - -
Accr12g01682 719 PANTHER DNA HELICASE RECQ FAMILY MEMBER 21 573 - -
Accr12g01682 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 47 221 IPR014001 -
Accr12g01682 719 Pfam Helicase conserved C-terminal domain 247 351 IPR001650 -
Accr12g01682 719 MobiDBLite consensus disorder prediction 376 395 - -
Accr12g01682 719 MobiDBLite consensus disorder prediction 695 719 - -
Accr12g01682 719 SMART ultradead3 35 237 IPR014001 -
Accr12g01682 719 MobiDBLite consensus disorder prediction 484 509 - -
Accr12g01682 719 FunFam ATP-dependent DNA helicase 20 228 - -
Accr12g01682 719 Pfam DEAD/DEAH box helicase 43 209 IPR011545 GO:0003676|GO:0005524
Accr12g01682 719 CDD DEXHc_RecQ 28 228 - -
Accr12g01682 719 SMART helicmild6 272 353 IPR001650 -
Accr12g01682 719 Pfam RecQ zinc-binding 366 437 IPR032284 -
Accr12g01682 719 MobiDBLite consensus disorder prediction 632 719 - -
Accr12g01682 719 CDD SF2_C_RecQ 229 362 - -
Accr12g01682 719 Gene3D - 6 228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01682 Accr-Chr12 28241686 28250630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01682 32 351 Eukaryotic Initiation Factors Gene Family AT3G19760 21.302 1.14e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01682 K10901 - gmx:100819601 1016.91