Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01616 ATGGCTTCATCCTTGGAGGAACTCCTAGCAGAAGAAGGGTTCAAGGGAAGTAGAAGAATCGCAAGATCCCGATCTTCCCTCCAGCCTTATCCTGAAAAACTTCCTCATTACTCCATCAGGGACCAGGAAATGAGGCTATCTGTGTCAGAGGACAGAATTAGAGTGGAGAGAACGAAATCTTATGTCTCACAATATCGGATTGGGGATGACTTTTTAAATAGAGATGCTGCTCTGAGCAGGAGACCAAGGGATAATCTTGCTGAAGGAGAGAATTTGGACGAAGGATTGAAGAATGACATTGTTGAGAAATCTTCCGGCAATACGGAGTTAAGTAAAAAATTTGATAGCAAAAAACCAGGACACAAACCCAGAAATGAGATAATTGAGGTGGGTGAGCAAGAGGACAGAGTTAAAGATGATTATTCCAATGAATTGTTAATTGCAAAAAGAGGGAAAGAAGAGTATCTGAATGACTTTAGGAATAAGTGGCCCAGGATGCTACTCAAGGATGCAAAGTTGGATAAGAGGCACAGCAGTAGTTCTAGTGCACATAAGGATGGACAGTTGAATGGAAGTATAAAGAAGAATATAAAGCAGAAGGAAAGATCATACAGTCAATCAACCAGTGAAAGCTTTGAAAAAATTAATGATAAAAATCATGGGCATGTTTCGCAGACACCGGCTGATGTAGCTCTCGATGAAGTTGCTGTACAAGCAGTTGTTTCTATTCTAAATGGATATATAAAACGCTTTCTAAATGATGAAGATTTTCGGAGCACGTTGCGTCACAATTGTTTTTCCTCCTTGAATTTCATTGAACTCGAAGATGAGAACAGTACTGAGATCAAAGTCATAAGAAGCCTTGAACAAGCAATTGATACAATAGAACAAGCTGCTGAGGAATCTGTATCTGAAAAAGAATTGAAGAGAACCTCTTTGCAGCTAAGCATTATTACAGGTCTAAGCTTAAATGAATTGAAGTATGGTTTTACATGTGGGATGCCTAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTAGTCTATAAGATACAGAGAAAAGATAAGGTATCGGCAAAGCATCTTTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCGCGGACAACATTGCTGCCTGAATTGTGGGAGTACTTATTTTCTCCACATCTTTCTCATTTGAGGGCATGGTACAAAAGGGAAGTTCATATGCTACTGGATATGCCAAGCAGAACAAGAAAAGTAAAGAATCTTGAAAAAGTGTATAATGAGCATTTGGATTCTGGTACATATTCATTTGCGGTATACTACAAGGACTGGCTCACTGAAGGAGCAGAAGCTCCATCGGTTCCTTCTGTCACCATTCCATCAATATCTGCTTCAGAAAGTCACCATGGAAGTCCCCTTGGTCAATCTTCTGAATTAGCTTCGCCTGTTGATTCATTCTCACCTCAGACAATGGTTAGCAAAAAACTGTACGATTCTGTCTTTGGTAGCTCGAGTAAAGCTGGAATTGAAGAAGAGAGAGATAATTCCATAGAAGATAACTTACACAACCAAATGAGACACTCGTGCAGTTCATCTATTGCTGAACAAAAATTAACATTTGTCTCTGAAAGGGTTAAATATACAGATGAAGATACCGAAGAAGATTCTAAGAAGATGACGCTTGCTATTGAGCTCCATACTAAAGAAACCTCATTGCTATATGATCTACCACATGAGAGAACTGATGAAGTCACCCTTAGCAAGGTGACAGGATCTGTTTTAGGCATGCAAGATACCAAAAGGCATTTTGATCCCATTGTGTCTGCTGGTTCACTGTCCAGTGAGGAATCAGTCTCCAACTCTGTTGTAAATGCAACAGAGACGAGTTCTTCTCCTAAAGGATTATATTTTCCCACTATTCCACAGGAGTTCATTTGTCCTTTGACTGGAACTATATTTGAGGAACCAACTACCCTTGAGACTGGTCAAACCTATGAACGAGCAGCTATCAAAGCCTGGTTTGAAAAGGGAAACAGAACTTGCCCGGTGTCTGGAAATAGTTTAGATTGTGTTGCCATGCCGTTAACTAACCTTGTTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAGCAATTTAATCGCATACTGGATTTTGCTTCTCAAATTGCAGACAAAGAAAGCCATAAGCTGAAACATGATGAGGCTGCTGTTTTTAATTTAGAGAGTCTCTTCACTTCATTGAATGGATCAAACAAAATAAATTATGTCAAACAACTCATCTCTATAGGGCTTCTGTCATTTCTTTTTAGGAGGGTTGAATTGGGAAATGTGGAAGAGAAAACACATGCGTTGGCACTTCTGCTAAATTGCAGTGAAGCAGATTCAAGTTGCATATATCAGATCGCAAGGAACATTGATAAAAAATTTCTTCTACAGCTTCTTTGCAGCAACGATGTTGCCCTAAGAACAGCTGCAATTTCATTGCTTGCTGAATTATTTTCTCTTAAAAGAAATGATGCTATTTCCTTCTTAAGTGATTTTGCTGGTCCAGATGTATTGAACACAATGACTGCTCTACTTTTGTTTCTTAAGAATTCTTCTCTGCATCAAAAACCCCTTGTTGCAGTTCTTCTGTTACACCTCGATTTACTGGACAATCTCTCACCGAAGACTGGGCCTCAAACGCATAGCATATACAGAGAGGAGGCAGTAAATGTCATTGCAGTTGTTCTCGATGCCAGCTTACATGATGACAAGGTCCAAGAAAAGTGTTGCAGGGCACTGCTTATTTTGGAAGGACTTTTTGCTACCAAAGGAAAGAAACAAGCCAAGACTGACATTTTAAAGCAAAATGAAGATGAAAATGATAGTTCAGAAGTCAATGCTTGTGAGCATGAAGAAGAGGGTTTAATATCATTGGAAGATGAAGAAGAAAAGAACAAAGAGTGGCTCGTGACCTTGTTAGAATTGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGAACATTTCAAGATGTTTAGCCTCTAGATACCTGGATTTGGTGAGGGTGTGTTTATTAACAGTTACATGGCTCAGTTCCAGACTTTCTCTACTAAGTAACTCTGGTTCACCCCTTCCTGCATTCCCGGCCATCATCTATCAGATCAAAGGAATACTGCGCAGTGGAGATCTTGAGCTCAAGACTCTTGCTTCTTTGTCCTTGTTTTATTTCAGTAAGATACCAGAAAGCAGAGCCCTTTTGATGACTATGGCAGAAGATATTACTGCTCCTCTTTATAGACTTGTTGATGTAACATGGACTGCAAAGCAGCTTCTTGTAATGTTAGGGAAGGAATTGTAA 3333 0.3945 MASSLEELLAEEGFKGSRRIARSRSSLQPYPEKLPHYSIRDQEMRLSVSEDRIRVERTKSYVSQYRIGDDFLNRDAALSRRPRDNLAEGENLDEGLKNDIVEKSSGNTELSKKFDSKKPGHKPRNEIIEVGEQEDRVKDDYSNELLIAKRGKEEYLNDFRNKWPRMLLKDAKLDKRHSSSSSAHKDGQLNGSIKKNIKQKERSYSQSTSESFEKINDKNHGHVSQTPADVALDEVAVQAVVSILNGYIKRFLNDEDFRSTLRHNCFSSLNFIELEDENSTEIKVIRSLEQAIDTIEQAAEESVSEKELKRTSLQLSIITGLSLNELKYGFTCGMPNYKLSACAHLYLSVVYKIQRKDKVSAKHLLQVFCDSPFQARTTLLPELWEYLFSPHLSHLRAWYKREVHMLLDMPSRTRKVKNLEKVYNEHLDSGTYSFAVYYKDWLTEGAEAPSVPSVTIPSISASESHHGSPLGQSSELASPVDSFSPQTMVSKKLYDSVFGSSSKAGIEEERDNSIEDNLHNQMRHSCSSSIAEQKLTFVSERVKYTDEDTEEDSKKMTLAIELHTKETSLLYDLPHERTDEVTLSKVTGSVLGMQDTKRHFDPIVSAGSLSSEESVSNSVVNATETSSSPKGLYFPTIPQEFICPLTGTIFEEPTTLETGQTYERAAIKAWFEKGNRTCPVSGNSLDCVAMPLTNLVLKRLIDNWKSEQFNRILDFASQIADKESHKLKHDEAAVFNLESLFTSLNGSNKINYVKQLISIGLLSFLFRRVELGNVEEKTHALALLLNCSEADSSCIYQIARNIDKKFLLQLLCSNDVALRTAAISLLAELFSLKRNDAISFLSDFAGPDVLNTMTALLLFLKNSSLHQKPLVAVLLLHLDLLDNLSPKTGPQTHSIYREEAVNVIAVVLDASLHDDKVQEKCCRALLILEGLFATKGKKQAKTDILKQNEDENDSSEVNACEHEEEGLISLEDEEEKNKEWLVTLLELLIGDGESPFLKNISRCLASRYLDLVRVCLLTVTWLSSRLSLLSNSGSPLPAFPAIIYQIKGILRSGDLELKTLASLSLFYFSKIPESRALLMTMAEDITAPLYRLVDVTWTAKQLLVMLGKEL 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01616 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 711 IPR013083 -
Accr12g01616 1110 Pfam U-box domain 637 708 IPR003613 GO:0004842|GO:0016567
Accr12g01616 1110 MobiDBLite consensus disorder prediction 453 482 - -
Accr12g01616 1110 MobiDBLite consensus disorder prediction 450 482 - -
Accr12g01616 1110 ProSiteProfiles U-box domain profile. 636 711 IPR003613 GO:0004842|GO:0016567
Accr12g01616 1110 PANTHER OS04G0584500 PROTEIN 604 1103 - -
Accr12g01616 1110 SUPERFAMILY ARM repeat 751 1092 IPR016024 -
Accr12g01616 1110 Gene3D - 722 952 IPR011989 -
Accr12g01616 1110 MobiDBLite consensus disorder prediction 97 127 - -
Accr12g01616 1110 SMART Ubox_2 640 704 IPR003613 GO:0004842|GO:0016567
Accr12g01616 1110 MobiDBLite consensus disorder prediction 18 38 - -
Accr12g01616 1110 Coils Coil 285 305 - -
Accr12g01616 1110 CDD RING-Ubox_PUB 638 697 IPR045210 -
Accr12g01616 1110 MobiDBLite consensus disorder prediction 174 224 - -
Accr12g01616 1110 SUPERFAMILY RING/U-box 624 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01616 Accr-Chr12 25380012 25387722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01616 636 882 U-box Gene Family AT1G23030 25.506 6.44e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01616 - - pcin:129319608 1251.11